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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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35 projects found  

2 accessions found for Desulfovibrio vulgaris DP4  

Data for CP000527  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000527.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000527_2257 CDS_2640574-2638895 103.5 3.9e-29 1
CP000527_0633 CDS_788826-785824 100.9 2.1e-28 1
CP000527_2479 CDS_2897670-2902277 98.9 7.7e-28 1
CP000527_0970 CDS_1196627-1198828 97.1 2.6e-27 1
CP000527_0576 CDS_729834-732851 94.1 1.8e-26 1
CP000527_1563 CDS_1862037-1858918 87.9 1e-24 1
CP000527_0330 CDS_423942-421075 87.7 1.2e-24 1
CP000527_0120 CDS_147592-145073 87.5 1.3e-24 1
CP000527_2937 CDS_3457699-3455891 83.3 2.1e-23 1
CP000527_2274 CDS_2658516-2660519 79.8 2.1e-22 1
CP000527_0817 CDS_1005247-1008252 78.5 4.8e-22 1
CP000527_2327 CDS_2723830-2726325 76.8 1.4e-21 1
CP000527_0317 CDS_407122-403451 76.8 1.4e-21 1
CP000527_0578 CDS_735527-734064 74.0 9.2e-21 1
CP000527_0314 CDS_395739-398981 72.0 3.4e-20 1
CP000527_2394 CDS_2799230-2801641 66.0 1.6e-18 1
CP000527_2032 CDS_2378817-2376385 63.9 6.5e-18 1
CP000527_0832 CDS_1023967-1025223 60.6 5.6e-17 1
CP000527_1651 CDS_1967881-1966142 59.4 1.3e-16 1
CP000527_2716 CDS_3185169-3187277 58.5 2.2e-16 1
CP000527_0233 CDS_287383-285722 58.1 2.9e-16 1
CP000527_0167 CDS_201010-202563 57.7 3.8e-16 1
CP000527_0016 CDS_24392-26431 53.7 5.3e-15 1
CP000527_2841 CDS_3324620-3323514 53.5 5.9e-15 1
CP000527_0659 CDS_811125-812510 51.6 2e-14 1
CP000527_1098 CDS_1342375-1339904 47.6 2.7e-13 1
CP000527_0435 CDS_557891-555690 47.4 3.1e-13 1
CP000527_0091 CDS_110797-109337 47.2 3.5e-13 1
CP000527_2362 CDS_2766649-2768667 46.4 5.9e-13 1
CP000527_2831 CDS_3311027-3312679 46.2 7e-13 1
CP000527_0057 CDS_71748-73529 43.5 3.9e-12 1
CP000527_2697 CDS_3157624-3155354 42.9 5.9e-12 1
CP000527_2219 CDS_2585398-2583401 42.9 6e-12 1
CP000527_2815 CDS_3292370-3290616 42.9 6e-12 1
CP000527_1207 CDS_1489789-1487192 42.7 6.9e-12 1
CP000527_2275 CDS_2660522-2662453 41.7 1.3e-11 1
CP000527_0700 CDS_865701-864079 39.4 5.9e-11 1
CP000527_0349 CDS_453770-450348 38.0 1.5e-10 1
CP000527_0407 CDS_523387-521654 37.1 2.6e-10 1
CP000527_2867 CDS_3365903-3367633 36.9 2.9e-10 1
CP000527_2225 CDS_2590048-2592291 36.3 4.2e-10 2
CP000527_2857 CDS_3345745-3349062 33.4 2.9e-09 2
CP000527_0315 CDS_401631-399337 33.3 3.1e-09 2
CP000527_0402 CDS_519516-518392 29.7 3.2e-08 1
CP000527_2166 CDS_2527319-2526033 28.6 6.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000527_2257 1/1 166 231 .. 1 87 [] 103.5 3.9e-29
CP000527_0633 1/1 610 675 .. 1 87 [] 100.9 2.1e-28
CP000527_2479 1/1 1151 1216 .. 1 87 [] 98.9 7.7e-28
CP000527_0970 1/1 352 417 .. 1 87 [] 97.1 2.6e-27
CP000527_0576 1/1 633 698 .. 1 87 [] 94.1 1.8e-26
CP000527_1563 1/1 658 723 .. 1 87 [] 87.9 1e-24
CP000527_0330 1/1 570 635 .. 1 87 [] 87.7 1.2e-24
CP000527_0120 1/1 436 501 .. 1 87 [] 87.5 1.3e-24
CP000527_2937 1/1 367 434 .. 1 87 [] 83.3 2.1e-23
CP000527_2274 1/1 141 206 .. 1 87 [] 79.8 2.1e-22
CP000527_0817 1/1 476 541 .. 1 87 [] 78.5 4.8e-22
CP000527_2327 1/1 249 315 .. 1 87 [] 76.8 1.4e-21
CP000527_0317 1/1 846 912 .. 1 87 [] 76.8 1.4e-21
CP000527_0578 1/1 259 327 .. 1 87 [] 74.0 9.2e-21
CP000527_0314 1/1 265 330 .. 1 87 [] 72.0 3.4e-20
CP000527_2394 1/1 580 645 .. 1 87 [] 66.0 1.6e-18
CP000527_2032 1/1 585 649 .. 1 87 [] 63.9 6.5e-18
CP000527_0832 1/1 169 244 .. 1 87 [] 60.6 5.6e-17
CP000527_1651 1/1 350 416 .. 1 87 [] 59.4 1.3e-16
CP000527_2716 1/1 452 517 .. 1 87 [] 58.5 2.2e-16
CP000527_0233 1/1 271 337 .. 1 87 [] 58.1 2.9e-16
CP000527_0167 1/1 262 360 .. 1 87 [] 57.7 3.8e-16
CP000527_0016 1/1 426 492 .. 1 87 [] 53.7 5.3e-15
CP000527_2841 1/1 142 208 .. 1 87 [] 53.5 5.9e-15
CP000527_0659 1/1 242 308 .. 1 87 [] 51.6 2e-14
CP000527_1098 1/1 442 508 .. 1 87 [] 47.6 2.7e-13
CP000527_0435 1/1 515 584 .. 1 87 [] 47.4 3.1e-13
CP000527_0091 1/1 265 333 .. 1 87 [] 47.2 3.5e-13
CP000527_2362 1/1 432 503 .. 1 87 [] 46.4 5.9e-13
CP000527_2831 1/1 267 333 .. 1 87 [] 46.2 7e-13
CP000527_0057 1/1 356 422 .. 1 87 [] 43.5 3.9e-12
CP000527_2697 1/1 525 596 .. 1 87 [] 42.9 5.9e-12
CP000527_2219 1/1 430 496 .. 1 87 [] 42.9 6e-12
CP000527_2815 1/1 349 422 .. 1 87 [] 42.9 6e-12
CP000527_1207 1/1 615 705 .. 1 87 [] 42.7 6.9e-12
CP000527_2275 1/1 386 457 .. 1 87 [] 41.7 1.3e-11
CP000527_0700 1/1 280 370 .. 1 87 [] 39.4 5.9e-11
CP000527_0349 1/1 769 835 .. 1 87 [] 38.0 1.5e-10
CP000527_0407 1/1 347 419 .. 1 87 [] 37.1 2.6e-10
CP000527_2867 1/1 301 391 .. 1 87 [] 36.9 2.9e-10
CP000527_0402 1/1 136 210 .. 1 87 [] 29.7 3.2e-08
CP000527_2166 1/1 150 216 .. 1 87 [] 28.6 6.7e-08

Alignments of top-scoring domains:
CP000527_2257: domain 1 of 1, from 166 to 231: score 103.5, E = 3.9e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP+++++g+++l+l+ t l++eq
CP000527_2 166 AKSEFLASMSHEIRTPMNGVLGMLDLALD---------TRLDDEQ-- 201

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yle ++++ae+ll+Lind+Ld+s+ieag
CP000527_2 202 ----------RDYLEAAQNSAESLLALINDILDFSKIEAG 231

CP000527_0633: domain 1 of 1, from 610 to 675: score 100.9, E = 2.1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHE+RTPL++I+g+ +lL t+l++eq
CP000527_0 610 AKTEFLANMSHEIRTPLNGIMGMMQLLVS---------TPLDDEQ-- 645

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ +++++ rl++L++d+Ldlsrieag
CP000527_0 646 ----------KQYVSNAISSSGRLSQLLSDVLDLSRIEAG 675

CP000527_2479: domain 1 of 1, from 1151 to 1216: score 98.9, E = 7.7e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ +g+++lL+ + ls+eq
CP000527_2 1151 TKSEFLANVSHELRTPLNGALGMLQLLEL---------SSLSPEQ-- 1186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+ t++r+++ l rL++d+Ldlsrieag
CP000527_2 1187 ----------RQYVTTAIRSGQNLVRLLSDILDLSRIEAG 1216

CP000527_0970: domain 1 of 1, from 352 to 417: score 97.1, E = 2.6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++++g+++lL++ t l++ q
CP000527_0 352 AKSAFLANMSHEIRTPLNGLLGMLDLLEA---------TGLDAGQ-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl ++r+++rl +L+ d+Ldlsrieag
CP000527_0 388 ----------AEYLGMARRSGRRLTDLLGDILDLSRIEAG 417

CP000527_0576: domain 1 of 1, from 633 to 698: score 94.1, E = 1.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL++++g+++lL++ ++l+ +q
CP000527_0 633 AKSEFLANMSHELRTPLNGMLGMLQLLEA---------GDLDRDQ-- 668

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++++l++++ llr ++d+Ldlsrieag
CP000527_0 669 ----------NELVHIALDSGRTLLRVLSDILDLSRIEAG 698

CP000527_1563: domain 1 of 1, from 658 to 723: score 87.9, E = 1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHE+RTPL++I g++ +L + + l + q
CP000527_1 658 AKDEFLANMSHEIRTPLNGIFGMLRMLAD---------ASLAPRQ-- 693

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ e + r+ +rl +L+ d+Ld+sri+ag
CP000527_1 694 ----------QELAEMAMRSCRRLADLLTDVLDISRIDAG 723

CP000527_0330: domain 1 of 1, from 570 to 635: score 87.7, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++++g+++lL++ ++l+++q
CP000527_0 570 AKSIFLANMSHEIRTPLNGVLGMLQLLED---------APLTSDQ-- 605

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++ ++++ ll ind+Ld++r+++
CP000527_0 606 ----------QELLHVASQSSRNLLTVINDILDFTRLGSV 635

CP000527_0120: domain 1 of 1, from 436 to 501: score 87.5, E = 1.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHELRTPL++++g+++lL e + + ++
CP000527_0 436 AKSEFLAHMSHELRTPLNGVMGMLQLLDE---------HVAAPQG-- 471

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+++l++++ llr+++d+Ldlsrieag
CP000527_0 472 ----------RAWLDVALESSRALLRILSDILDLSRIEAG 501

CP000527_2937: domain 1 of 1, from 367 to 434: score 83.3, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TPLt+I+gyae+Lle ++++s eq+
CP000527_2 367 IRRDFVANVSHELKTPLTSIKGYAETLLE--------SPPASCEQA- 404

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +til+ a+++ +++n lL l+r e+
CP000527_2 405 ----------GAFMRTILKNANHMTKMVNSLLVLARSEHK 434

CP000527_2274: domain 1 of 1, from 141 to 206: score 79.8, E = 2.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+R+ L++I g++el l+ t+ls eq
CP000527_2 141 AKTSFLAGMSHEIRNTLNGIVGMTELVLD---------TPLSGEQ-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+t+l ++e ll L+ d+Ld+sr+ea
CP000527_2 177 ----------RESLNTVLASSETLLTLLHDVLDFSRLEAR 206

CP000527_0817: domain 1 of 1, from 476 to 541: score 78.5, E = 4.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL+aI+g++el l ++ s
CP000527_0 476 AKSVFLANMSHEIRTPLNAIIGLTELTLQ---------EPISQGV-- 511

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ +l++ae ll+ +ndlLdlsr e+g
CP000527_0 512 ----------GENLRGVLHSAEALLAVVNDLLDLSRVESG 541

CP000527_2327: domain 1 of 1, from 249 to 315: score 76.8, E = 1.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sH++RTPLt+I+g+a+lL++ + +++e r
CP000527_2 249 MKSAFLANMSHDMRTPLTGIIGMADLLEA---------PGCPPERR- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ ++ ++ ll+++nd+ d+s +e+g
CP000527_2 286 ----------SAYIAQLKGASANLLEIVNDITDYSCLESG 315

CP000527_0317: domain 1 of 1, from 846 to 912: score 76.8, E = 1.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+an+sHE+RTPL++I+g a+++l+ te ++ +
CP000527_0 846 LKSQFVANISHEMRTPLSGILGIADVALT---------TEGNPALL- 882

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++ +++ ae ll indlLd+sr+eag
CP000527_0 883 ----------RNYFSMVQNVAEGLLGVINDLLDFSRLEAG 912

CP000527_0578: domain 1 of 1, from 259 to 327: score 74.0, E = 9.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl +++H+LR+P+++Irg++ +Ll+ ++ ++l+ +q
CP000527_0 259 LKNRFLGMAAHDLRNPINGIRGFTRMLLD------GILGPLNTDQ-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+t++++++ +l L+ndlLd + ie+g
CP000527_0 298 ----------RGILSTVHEASNDMLLLVNDLLDVTVIESG 327

CP000527_0314: domain 1 of 1, from 265 to 330: score 72.0, E = 3.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +fla++ HE RTP+t+I+g++++ l+ + l +
CP000527_0 265 AMADFLAAITHEVRTPMTGIIGLLDISLR---------GQLEPRL-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re le+++++++ ll+ in +Ld+srieag
CP000527_0 301 ----------REHLEIVRSSSHALLDVINGVLDFSRIEAG 330

CP000527_2394: domain 1 of 1, from 580 to 645: score 66.0, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+l+HE+++PL +I+ yaelL++ + +++
CP000527_2 580 SVGRLAAGLAHEINNPLGVIMCYAELLQT---------QVGGSQA-- 615

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++ilr + + +r ++dlLd++r
CP000527_2 616 ----------RHDLDIILRHTLQAQRVVRDLLDFARPKDT 645

CP000527_2032: domain 1 of 1, from 585 to 649: score 63.9, E = 6.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ a+l+HE+++PL +I+ yaelL+ +++eq
CP000527_2 585 TVGKLSAGLAHEINNPLGVILCYAELLRQ----------GATAEQ-- 619

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +ilr +++ ++ ++dlLd++r a
CP000527_2 620 ----------QDDLGIILRHTRQAQKVLRDLLDFARPKAF 649

CP000527_0832: domain 1 of 1, from 169 to 244: score 60.6, E = 5.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+ ++a+++HE ++PLtaI g+ae +l+++++++ d++l ++
CP000527_0 169 TVGMLAAGVAHEVNNPLTAINGFAEGILRRVERLrGSVDPDLHADL- 214

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y til e +r+++++ lL++sr +
CP000527_0 215 -----------ADYAGTILGECRRCQEIVHSLLTFSRPHSS 244

CP000527_1651: domain 1 of 1, from 350 to 416: score 59.4, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL+a+rg+a+ ++l + +++e+
CP000527_1 350 ALGTLAAGVAHEIRNPLSALRGFAQYFAKKL------VGRQPDET-- 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +t+ rea+rl+r i dlL lsr +a
CP000527_1 389 ------------YAQTMVREADRLNRVITDLLYLSRPRAM 416

CP000527_2716: domain 1 of 1, from 452 to 517: score 58.5, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++HE++TPL I+gya+lL++ + + q+
CP000527_2 452 SIGKLAGGVAHEINTPLGIILGYAQLLQD----------DVPQGQL- 487

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +i+++a+ ++++++dlL +sr +
CP000527_2 488 ----------RDDLGIIEKQAKFCRKIVSDLLGFSRQTES 517

CP000527_0233: domain 1 of 1, from 271 to 337: score 58.1, E = 2.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++ +++HE+R+PL aI g+a Ll+ ++l+e
CP000527_0 271 AIGELATYIAHEIRNPLFAIGGFANSLLR--------LPTLDETA-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++il+e++rl+++++ +L ++r +
CP000527_0 308 ----------RGKVQVILEESRRLDNILRSILNFARPTTS 337

CP000527_0167: domain 1 of 1, from 262 to 360: score 57.7, E = 3.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldk..............
++++ +a+++HE+R+PL Ir aelLl+++ ++++++++++++++
CP000527_0 262 SMGRVIASIAHEIRNPLGIIRSSAELLLKRAANgggsggggnngsgg 308

.........v.lagdtelseeqrlpeLRledpeyreyletilreaerllr
++++++++ + + ++ ++ r++le i++e+ rl++
CP000527_0 309 isgsngsggSnGSRASNGDAMS------------RRILEAIYDESMRLSQ 346

LindlLdlsrieag<-*
+nd+Ld++r + +
CP000527_0 347 TVNDFLDYARPRKP 360

CP000527_0016: domain 1 of 1, from 426 to 492: score 53.7, E = 5.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++HE+R+PL++I+gya +++ + ++++
CP000527_0 426 AVGNLAAGVAHEIRNPLSSIKGYATYFGTRF--------PEGSDD-- 462

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ +++ +e++rl+r i+dl lsr
CP000527_0 463 ----------REAARVMVQEVDRLNRVISDLIGLSRPSDI 492

CP000527_2841: domain 1 of 1, from 142 to 208: score 53.5, E = 5.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+++H R+PLt++++ + L++ + +l+ +q
CP000527_2 142 LVGKLAAGVAHSVRNPLTSVKLRLFSLER--------SLTLDTQQ-- 178

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +e+i +e+++l+++++++L++sr
CP000527_2 179 ----------REDFEVIADEIRHLDAIVSNFLEFSRRPKL 208

CP000527_0659: domain 1 of 1, from 242 to 308: score 51.6, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l n++H+LRTPLt +r+ ae+ l +s e+
CP000527_0 242 NMRRMLDNVAHDLRTPLTRLRTQAEMTLL---------KGASVEE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l + l+e +rl +++ +Ldls +e+g
CP000527_0 278 ---------CRDLLARQLSEYDRLVQMVGMVLDLSEAESG 308

CP000527_1098: domain 1 of 1, from 442 to 508: score 47.6, E = 2.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ L +++gy+e+ l+ ++ + +
CP000527_1 442 AIGTLAGGIAHDFNNILGVMMGYTEMSLD---------QADEDSPM- 478

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ +l++++r +++i ++L++sr e++
CP000527_1 479 ----------HRRLSEVLEAGKRARDIIHQILTMSRQEEP 508

CP000527_0435: domain 1 of 1, from 515 to 584: score 47.4, E = 3.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ ++HE+++PLt I++ a+ L++++ +++ ++ +
CP000527_0 515 AWREVARRIAHEIKNPLTPIKLSAQRLERKF-------GPRVDDPV- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e+l+++++++ +++++ +
CP000527_0 554 ---------FGQCTALIVKQVEHLQQMVQEFSTFAKLPEV 584

CP000527_0091: domain 1 of 1, from 265 to 333: score 47.2, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++++++H+L++PL+ I++ +++L+e+ + ++e +
CP000527_0 265 SLGVLTSGIAHQLNNPLNNISTSCQILQEDI-------GSGDAELH- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i++e+ r ++++ lL+++r
CP000527_0 304 ----------ARMLRNIHQEVLRSRDIVKGLLEFAREKDF 333

CP000527_2362: domain 1 of 1, from 432 to 503: score 46.4, E = 5.9e-13
*->akseflanlsHELRTPLtaIrg...yaelLleeldkvlagdtelsee
+++e+ a+++HEL++PL+aIr++++y+ ++le++ + ++e
CP000527_2 432 SLGEMSAGVAHELNQPLNAIRMgsdYLNMALEQG-------LPVPPE 471

qrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
q+ re + i +++r ++in l+ + r +
CP000527_2 472 QL-----------REVTLDICGQVDRATEIINTLRSFGRKSEI 503

CP000527_2831: domain 1 of 1, from 267 to 333: score 46.2, E = 7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++HE+++PL ++++ L e + ++e +r
CP000527_2 267 TIGQLASGVAHEINNPLGGVILCFRNLTE---------GGMDEATR- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e+i++ +e ++r++++l+ ++r
CP000527_2 304 ----------RQHIEVIDDGLEKIRRIVRELMHYARPAPL 333

CP000527_0057: domain 1 of 1, from 356 to 422: score 43.5, E = 3.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+se++ +sHEL+TP+ ++ ++aelL + +++ ++++
CP000527_0 356 LRSEMMDWISHELKTPVQSLGLAAELLGR---------QDMQDDDM- 392

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ti+++a rl+ ++++d++r++
CP000527_0 393 ----------RLLVDTIREDAVRLRTVSRQFMDIARMRVD 422

CP000527_2697: domain 1 of 1, from 525 to 596: score 42.9, E = 5.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++ +++HEL++PLt+I++++ Ll+ + ++e+ ++
CP000527_2 525 TLGEMATGVAHELNQPLTVIKAASGFLLR--------KARKGEPVAP 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++ ++ ++r +r+i+ ++++ r
CP000527_2 564 DVL-------STMTAEMDAHVDRASRIIEHMREFGRKSDI 596

CP000527_2219: domain 1 of 1, from 430 to 496: score 42.9, E = 6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++a+++HE++ P +aI+ a+lL e ++ ++ +
CP000527_2 430 TIGELAAGVAHEINSPANAIINCADLLME---------DAFDSAMV- 466

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++i++e++r ++ +lL ++r + +
CP000527_2 467 ----------RDMARRIRSEGQRVAAITHNLLAFARERKP 496

CP000527_2815: domain 1 of 1, from 349 to 422: score 42.9, E = 6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P++ ++ a +++ la +e ++
CP000527_2 349 ALGEMAAGIAHEINNPVAIMMEEAGWIED----ILADLGEGNPAA-- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
pe+++ i+++++r++++ lL ++r
CP000527_2 390 -------PEIARSAAQIRSQGKRCRDITHKLLSFARKSDR 422

CP000527_1207: domain 1 of 1, from 615 to 705: score 42.7, E = 6.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldk.....v.lagdtel
+ + ++a+++HE+++PL aI+ ++ L+++l + + +v++ ++ l
CP000527_1 615 SVGALAAGMAHEINNPLGAILQGVQNLRRRLTAdlpanVnATSEVGL 661

seeqrlpeLR..ledpeyreyletilreaerllrLindlLdlsrieag<-
+ eq LR e + + +l+ i++++er r+++ +L++sr +g
CP000527_1 662 TMEQ----LRayVESRQIPMLLDGIREAGERAGRIVSHMLTFSRRSQG 705

*

CP000527_1 - -

CP000527_2275: domain 1 of 1, from 386 to 457: score 41.7, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++HE+++PL+a+r+ya L++ + ++++ +r
CP000527_2 386 ALGTLATGVAHEINQPLSALRLYAGGLEMLV-------EKRPVVDR- 424

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L e l++ilrea+r++++i+ ++ l +
CP000527_2 425 DML-------LERLSRILREADRIRDIIEHMRALVTHGDI 457

CP000527_0700: domain 1 of 1, from 280 to 370: score 39.4, E = 5.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldk.....v.lagdtel
+ + +a+++HE+++PL+aI +a+ ++++l + ++ ++a+ t +
CP000527_0 280 SVGGVAAGMAHEINNPLSAIAQAAQNIERRLATdlagnIkAASVTGM 326

seeqrlpeLR..ledpeyreyletilreaerllrLindlLdlsrieag<-
+ e LR+ le +++ +l i+++ r +++++Ld+sr
CP000527_0 327 DLEA----LRnyLEARGVPMLLGHIRDACARAATIVRNMLDFSRRSDS 370

*

CP000527_0 - -

CP000527_0349: domain 1 of 1, from 769 to 835: score 38.0, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++sH++++ Lt+I+ +el+ +++ ++++ +
CP000527_0 769 AIGTLAGGISHDFNNILTSIINSIELAINDV--------AADSLT-- 805

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++l++a+r +rL+ ++L++sr +
CP000527_0 806 ----------FTDLMRALKAAQRGSRLVKQILTFSRPSVE 835

CP000527_0407: domain 1 of 1, from 347 to 419: score 37.1, E = 2.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+++PL+ I a l+ + + a +++ + ++r
CP000527_0 347 SIGRLAAGVAHEINNPLAIINEKAGLAAD----LIALSQDFPQKER- 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e i r+++r++++ +lL +sr
CP000527_0 389 ---------FSAIVEAISRSVDRCRSITHRLLGFSRRMDA 419

CP000527_2867: domain 1 of 1, from 301 to 391: score 36.9, E = 2.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE+++PL++I+ a++ ++ + + + + ++
CP000527_2 301 SLGGLAAGMAHEINNPLAVILQGADTVQR--------RLAPGLPANR 339

peLR...l.........edpeyreyletilreaerllrLindlLdlsrie
+ +R+ +l+ + ++ e + +++ i ++++r ++++++L + r +
CP000527_2 340 DIAReigLdldlmhtylERRKLPRFIAGIAEAGRRAADIVENMLSFGRGD 389

ag<-*
+g
CP000527_2 390 EG 391

CP000527_0402: domain 1 of 1, from 136 to 210: score 29.7, E = 3.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++HE+++P++ I +a +++ l+++++ + +
CP000527_0 136 SMGRMAEGVAHEINNPVNIIANAAGWIED-----LLEEPDIASGPH- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e r+ l +i++++ r +++ + lL + r +
CP000527_0 177 ------VAEMRRTLAKIKQQGVRVREITRKLLCFGRGLDP 210

CP000527_2166: domain 1 of 1, from 150 to 216: score 28.6, E = 6.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l++lsH++ + L++I+g+ae++++ + +++ +
CP000527_2 150 VQAALLRGLSHDFGNALASIMGFAEIART---------RPVDDPLL- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ +l+ + l+L ++ + ++ +++
CP000527_2 187 ----------ARSLDNVLKGCAQALSLMDRARAMAGRQSP 216


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-13 26 2|*==
-12 133 67|======*=======
-11 270 348|=========================== *
-10 474 646|================================================ *
-9 548 667|======================================================= *
-8 526 500|=================================================*===
-7 353 315|===============================*====
-6 216 181|==================*===
-5 146 99|=========*=====
-4 78 53|=====*==
-3 50 28|==*==
-2 32 14|=*==
-1 14 7|*=
0 9 4|*
1 3 2|*
2 3 1|*
3 2 0|=
4 2 0|=
5 0 0|
6 1 0|=
7 0 0|
8 0 0|
> 9 55 -|======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 237.8234
P(chi-square) = 1.857e-314

Total sequences searched: 2941

Whole sequence top hits:
tophits_s report:
Total hits: 45
Satisfying E cutoff: 45
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 42
Satisfying E cutoff: 42
Total memory: 38K


Acknowledgements:

This research is funded by:

Developed by: