Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
35 projects found  

2 accessions found for Desulfovibrio vulgaris DP4  

Data for CP000528  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000528.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000528_0068 CDS_84085-87390 29.9 1.5e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000528_0068 1/1 842 932 .. 1 87 [] 29.9 1.5e-09

Alignments of top-scoring domains:
CP000528_0068: domain 1 of 1, from 842 to 932: score 29.9, E = 1.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldk........v.lagd
+ + +a+++HE+++PL I+ +a+ L +++++ ++++ a +
CP000528_0 842 SVGGIAAGIAHEINNPLGIILQAAHNLAQ---RtrpdfaknLdVATR 885

telseeqrlpeLR..ledpeyreyletilreaerllrLindlLdlsriea
l+ + LR+ e + ++e i+++a r +++i+ +Ld+sr +
CP000528_0 886 VGLDMDA----LRqyMEQRKLDVFIEDIRDAAVRASAIIRHMLDFSRSGG 931

g<-*

CP000528_0 932 S 932


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 1 0|=
-12 4 3|==*=
-11 9 17|========= *
-10 19 32|=================== *
-9 25 34|========================= *
-8 28 25|========================*===
-7 24 16|===============*========
-6 16 9|========*=======
-5 9 5|====*====
-4 6 2|=*====
-3 4 1|*===
> -2 5 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 24.7936
P(chi-square) = 0.0003728

Total sequences searched: 150

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: