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Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

9 accessions found for Polaromonas naphthalenivorans CJ2  

Data for CP000529  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000529.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000529_0432 CDS_452337-455729 93.3 4.3e-26 1
CP000529_2357 CDS_2502203-2505577 92.4 7.5e-26 1
CP000529_1063 CDS_1142908-1139432 80.1 2.4e-22 1
CP000529_0968 CDS_1027200-1030727 80.1 2.4e-22 1
CP000529_2181 CDS_2349956-2348610 79.6 3.2e-22 1
CP000529_2847 CDS_3022029-3018244 79.1 4.6e-22 1
CP000529_3570 CDS_3829403-3826704 74.5 8.9e-21 1
CP000529_0089 CDS_93497-96289 73.7 1.6e-20 1
CP000529_0393 CDS_396612-394345 69.0 3.3e-19 1
CP000529_2753 CDS_2922508-2921411 63.2 1.4e-17 1
CP000529_3352 CDS_3584271-3585989 63.2 1.5e-17 1
CP000529_1523 CDS_1624773-1626122 62.2 2.8e-17 1
CP000529_1689 CDS_1805475-1809701 62.0 3.2e-17 1
CP000529_3131 CDS_3357058-3358227 61.8 3.7e-17 1
CP000529_3599 CDS_3863461-3861164 61.6 4.2e-17 2
CP000529_2663 CDS_2833150-2831381 61.0 6.1e-17 1
CP000529_2943 CDS_3139238-3140326 59.8 1.3e-16 1
CP000529_3927 CDS_4223057-4224502 58.5 3.2e-16 1
CP000529_0104 CDS_113225-115198 58.3 3.6e-16 1
CP000529_0028 CDS_29060-27624 58.1 4.1e-16 1
CP000529_3344 CDS_3574388-3575851 57.7 5.1e-16 1
CP000529_0095 CDS_101249-104923 56.0 1.6e-15 1
CP000529_4013 CDS_4317799-4319460 55.5 2.1e-15 1
CP000529_0164 CDS_176615-178423 54.4 4.5e-15 1
CP000529_3472 CDS_3719350-3716927 54.2 5.2e-15 1
CP000529_3078 CDS_3288905-3290257 53.4 8.4e-15 1
CP000529_4012 CDS_4316507-4317802 52.8 1.3e-14 1
CP000529_0845 CDS_905437-907767 51.3 3.4e-14 1
CP000529_3795 CDS_4079606-4080913 50.4 6.1e-14 1
CP000529_0445 CDS_468674-472207 49.7 9.5e-14 1
CP000529_0355 CDS_357176-359512 49.2 1.4e-13 1
CP000529_3656 CDS_3925016-3926383 49.0 1.5e-13 1
CP000529_3839 CDS_4124480-4123071 47.8 3.3e-13 1
CP000529_4011 CDS_4315215-4316510 47.8 3.3e-13 1
CP000529_1220 CDS_1324425-1322986 46.9 5.9e-13 1
CP000529_2631 CDS_2798238-2795491 45.9 1.2e-12 1
CP000529_0148 CDS_161892-160648 44.3 3.2e-12 1
CP000529_1060 CDS_1137928-1136720 43.4 6e-12 1
CP000529_2523 CDS_2684388-2685764 42.0 1.4e-11 1
CP000529_2714 CDS_2885317-2883968 36.0 7.6e-10 1
CP000529_1935 CDS_2076126-2074750 35.3 1.2e-09 1
CP000529_3715 CDS_3992384-3990405 34.4 2.1e-09 1
CP000529_3252 CDS_3485353-3483311 34.0 2.7e-09 1
CP000529_1763 CDS_1893311-1890741 32.1 9.3e-09 1
CP000529_2645 CDS_2811241-2813064 28.5 9.6e-08 1
CP000529_3697 CDS_3969886-3971073 28.3 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000529_0432 1/1 472 537 .. 1 87 [] 93.3 4.3e-26
CP000529_2357 1/1 467 532 .. 1 87 [] 92.4 7.5e-26
CP000529_1063 1/1 486 554 .. 1 87 [] 80.1 2.4e-22
CP000529_0968 1/1 710 776 .. 1 87 [] 80.1 2.4e-22
CP000529_2181 1/1 213 279 .. 1 87 [] 79.6 3.2e-22
CP000529_2847 1/1 886 951 .. 1 87 [] 79.1 4.6e-22
CP000529_3570 1/1 670 737 .. 1 87 [] 74.5 8.9e-21
CP000529_0089 1/1 556 622 .. 1 87 [] 73.7 1.6e-20
CP000529_0393 1/1 375 441 .. 1 87 [] 69.0 3.3e-19
CP000529_2753 1/1 142 206 .. 1 87 [] 63.2 1.4e-17
CP000529_3352 1/1 336 401 .. 1 87 [] 63.2 1.5e-17
CP000529_1523 1/1 232 297 .. 1 87 [] 62.2 2.8e-17
CP000529_1689 1/1 1037 1105 .. 1 87 [] 62.0 3.2e-17
CP000529_3131 1/1 164 232 .. 1 87 [] 61.8 3.7e-17
CP000529_2663 1/1 227 292 .. 1 87 [] 61.0 6.1e-17
CP000529_2943 1/1 125 188 .. 1 87 [] 59.8 1.3e-16
CP000529_3599 1/2 537 609 .. 1 87 [] 58.9 2.4e-16
CP000529_3927 1/1 250 315 .. 1 87 [] 58.5 3.2e-16
CP000529_0104 1/1 267 332 .. 1 87 [] 58.3 3.6e-16
CP000529_0028 1/1 255 321 .. 1 87 [] 58.1 4.1e-16
CP000529_3344 1/1 262 330 .. 1 87 [] 57.7 5.1e-16
CP000529_0095 1/1 997 1069 .. 1 87 [] 56.0 1.6e-15
CP000529_4013 1/1 308 376 .. 1 87 [] 55.5 2.1e-15
CP000529_0164 1/1 372 440 .. 1 87 [] 54.4 4.5e-15
CP000529_3472 1/1 587 655 .. 1 87 [] 54.2 5.2e-15
CP000529_3078 1/1 217 283 .. 1 87 [] 53.4 8.4e-15
CP000529_4012 1/1 190 258 .. 1 87 [] 52.8 1.3e-14
CP000529_0845 1/1 396 462 .. 1 87 [] 51.3 3.4e-14
CP000529_3795 1/1 225 287 .. 1 87 [] 50.4 6.1e-14
CP000529_0445 1/1 946 1018 .. 1 87 [] 49.7 9.5e-14
CP000529_0355 1/1 548 616 .. 1 87 [] 49.2 1.4e-13
CP000529_3656 1/1 239 304 .. 1 87 [] 49.0 1.5e-13
CP000529_3839 1/1 246 311 .. 1 87 [] 47.8 3.3e-13
CP000529_4011 1/1 190 258 .. 1 87 [] 47.8 3.3e-13
CP000529_1220 1/1 254 317 .. 1 87 [] 46.9 5.9e-13
CP000529_2631 1/1 685 753 .. 1 87 [] 45.9 1.2e-12
CP000529_0148 1/1 182 243 .. 1 87 [] 44.3 3.2e-12
CP000529_1060 1/1 169 242 .. 1 87 [] 43.4 6e-12
CP000529_2523 1/1 247 306 .. 1 87 [] 42.0 1.4e-11
CP000529_2714 1/1 232 294 .. 1 87 [] 36.0 7.6e-10
CP000529_1935 1/1 211 306 .. 1 87 [] 35.3 1.2e-09
CP000529_3715 1/1 439 509 .. 1 87 [] 34.4 2.1e-09
CP000529_3252 1/1 311 377 .. 1 87 [] 34.0 2.7e-09
CP000529_1763 1/1 604 674 .. 1 87 [] 32.1 9.3e-09
CP000529_2645 1/1 390 456 .. 1 87 [] 28.5 9.6e-08
CP000529_3697 1/1 150 232 .. 1 87 [] 28.3 1.1e-07

Alignments of top-scoring domains:
CP000529_0432: domain 1 of 1, from 472 to 537: score 93.3, E = 4.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak fla++sHE+RTPL+++ g++ lL + t+l+ eq
CP000529_0 472 AKAAFLAAMSHEIRTPLNGVVGMTTLLAD---------TPLDLEQ-- 507

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++t++ ++++ll ind+Ld+s+ie+g
CP000529_0 508 ----------RDYVHTMRISSDQLLGVINDILDFSKIESG 537

CP000529_2357: domain 1 of 1, from 467 to 532: score 92.4, E = 7.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak fla++sHE+RTPL+++ g++ lL e t+l++eq
CP000529_2 467 AKAAFLATMSHEIRTPLNGVVGMSTLLAE---------TALDAEQ-- 502

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ti+ ++++ll+ i+d+Ld+s+ie+g
CP000529_2 503 ----------RDILQTIRLSSDQLLAVISDILDFSKIESG 532

CP000529_1063: domain 1 of 1, from 486 to 554: score 80.1, E = 2.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +++lL +++ ++l++eq
CP000529_1 486 YKSEFLANMSHELRTPLNSSLILSKLLSDNQK------GNLDAEQ-- 524

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i+++++ ll+Lind+Ld+s+ eag
CP000529_1 525 ----------VKFAQSIYSAGNDLLNLINDILDISKVEAG 554

CP000529_0968: domain 1 of 1, from 710 to 776: score 80.1, E = 2.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ ++++sHELRTPL++I+gya+l+ e d+ ++
CP000529_0 710 AKSRYISAISHELRTPLNSILGYAQLMGE--------DASIPPHR-- 746

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+r +e+ll+Li+ Ld++rieag
CP000529_0 747 ----------QQAVSVIKRGGEHLLSLIEGTLDIARIEAG 776

CP000529_2181: domain 1 of 1, from 213 to 279: score 79.6, E = 3.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHE+RTPLt+++g++e+L++ + + +e
CP000529_2 213 MRRDFVANVSHEIRTPLTVVSGFIETLQT--------FPLKKPER-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl + ++++r++ L++dlL+lsr+e
CP000529_2 250 ----------DRYLCLMAQQSQRMQTLVDDLLTLSRLEGS 279

CP000529_2847: domain 1 of 1, from 886 to 951: score 79.1, E = 4.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+lsHELR+PL+ + +++lL++ ++ ++q
CP000529_2 886 RKDEFLAMLSHELRNPLAPLASAVQLLQR---------QKNEAPQ-- 921

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+r++ +l +L++dl+++sri +g
CP000529_2 922 ----------QQALSIIERQTGQLKHLVDDLMEISRITSG 951

CP000529_3570: domain 1 of 1, from 670 to 737: score 74.5, E = 8.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+ RTPLta++g+ae L++ + ++l ++q
CP000529_3 670 LRNTLLAALSHDVRTPLTALIGLAESLQRSQ-------PPLEPQQ-- 707

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + + ++a++l++L+++lLd++r+++g
CP000529_3 708 ----------AGMAQAMAQQARQLNALVSNLLDMARLQNG 737

CP000529_0089: domain 1 of 1, from 556 to 622: score 73.7, E = 1.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+l+HELR+PL+ I ++a+lL + ++l++e +
CP000529_0 556 LKDEFLAMLAHELRNPLAPIATAAHLLST---------GTLDPEGL- 592

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i r+a ++ rLi+dlLd sr g
CP000529_0 593 ----------SRLSEVISRQAGHMTRLIDDLLDVSRVTWG 622

CP000529_0393: domain 1 of 1, from 375 to 441: score 69.0, E = 3.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HELR+PL+aI g++ l ++ + ++ ++
CP000529_0 375 AKDQFLAMLGHELRNPLAAIGGAIALSER---------HGHGSATA- 411

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +i+r++ +l +Li+dlLd sr+ g
CP000529_0 412 ----------AEARAIIQRQSGHLAHLIDDLLDVSRMVGG 441

CP000529_2753: domain 1 of 1, from 142 to 206: score 63.2, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL++ e + +
CP000529_2 142 ANKELIRNLAHEIKNPLGGIRGAAQLLQM----------EIDKDL-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i++ea+rl+ L+++lL r +
CP000529_2 177 ----------TEYTQVIIHEADRLQTLVDRLLAPHRRPHL 206

CP000529_3352: domain 1 of 1, from 336 to 401: score 63.2, E = 1.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HE+R+PL+aI+ + lL+e + ++ q
CP000529_3 336 AMGRMSAAVAHEIRNPLAAISQANALLEE---------DLHDAGQ-- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + i + a+rl ++++++L +sr++++
CP000529_3 372 ----------RQLSRMIAQNAQRLAKIVDEVLNISRAQQQ 401

CP000529_1523: domain 1 of 1, from 232 to 297: score 62.2, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTP++aIr+ a+++ + ++
CP000529_1 232 SERRFTADAAHELRTPIAAIRMQAQVAMG---------ESDNALR-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ l+ +r rL+++lL lsr+ea
CP000529_1 268 ----------QHALQGTLEGCDRATRLVEQLLSLSRLEAA 297

CP000529_1689: domain 1 of 1, from 1037 to 1105: score 62.0, E = 3.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHEL+ PL+ I+ ++elLl +++ +l+e
CP000529_1 1037 LKDQFLAVMSHELKHPLNLIQVNTELLLS-----QPEVRALPEVV-- 1076

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ eti++++ + ++i+dlLdlsr+++g
CP000529_1 1077 -----------RAGETIRHAVVSQTKIIDDLLDLSRARTG 1105

CP000529_3131: domain 1 of 1, from 164 to 232: score 61.8, E = 3.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a++sH+LR PL++I+g++ +L++ +++l+ r
CP000529_3 164 SLRAFSASASHDLRAPLASIKGFCAMLRK--------SADLPHGSRS 202

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +i+ a+r+ +Li+ +L+l++ +
CP000529_3 203 ----------AHYMARIEANADRMGQLIESMLELAQSTSS 232

CP000529_2663: domain 1 of 1, from 227 to 292: score 61.0, E = 6.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+P++a +++e+L + l++ q
CP000529_2 227 AKSKFLAAASHDLRQPIHAQGLFLEVLGQ---------SLLTAHQ-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ +++++ ++++n lLd+sri+ag
CP000529_2 263 ----------REVLDCARSASLASSEMLNTLLDFSRIDAG 292

CP000529_2943: domain 1 of 1, from 125 to 188: score 59.8, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ ++sHELR PL+ +++++ l+ ++ q+
CP000529_2 125 QRQQLFHDVSHELRSPLARMQAAIGLMHQ------------NPAQT- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e+i+ e++r++ Li++lL++ r+eag
CP000529_2 159 ----------GPMVERIECETQRMDVLIEELLTFHRLEAG 188

CP000529_3599: domain 1 of 2, from 537 to 609: score 58.9, E = 2.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l+ ++l + +++
CP000529_3 537 AWGEVARRLAHEIKNPLTPIQLSAERLEMKLN------GKLAPAEQA 577

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti ++++ + rL+n+++d++r+ a
CP000529_3 578 LL--------TKSVKTIVDQVDAMKRLVNEFRDYARLPAA 609

CP000529_3927: domain 1 of 1, from 250 to 315: score 58.5, E = 3.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla+++H+L+TPL+++r+ a+l+++ e ++eq+
CP000529_3 250 TQKRFLADAAHQLKTPLAGLRMQADLAQR----------ETDAEQL- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i +++ r + +n+lL l+r+e+
CP000529_3 286 ----------KNSLRHIGQASIRATHTVNQLLALARAETT 315

CP000529_0104: domain 1 of 1, from 267 to 332: score 58.3, E = 3.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sH+LR+P++a+ +++e L + t l++ q
CP000529_0 267 AKSNFLAGASHDLRQPVHALNLFLESLST---------TRLDARQ-- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++ ++ +++++ lLd+srieag
CP000529_0 303 ----------ETIVTHARAASLASREMLDTLLDFSRIEAG 332

CP000529_0028: domain 1 of 1, from 255 to 321: score 58.1, E = 4.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l HE + PL+aIrg+aelL+e + ++ +r
CP000529_0 255 YVADYVQTLTHEVKSPLSAIRGAAELLQE---------PSMPQAER- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i rea r++++++++++l+ +e+
CP000529_0 292 ----------QRFLANITREAGRIQEMVDRMMELTALETR 321

CP000529_3344: domain 1 of 1, from 262 to 330: score 57.7, E = 5.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fl+++sHEL+TPL+++r ++lL++++ ++ls +q
CP000529_3 262 DKSRFLRHISHELKTPLASLREGVSLLEDGVA------GPLSHDQ-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ +++++ + l+++i+dlL + + +
CP000529_3 301 ----------REIAQILKHNTGVLQSQIEDLLRFNTAAFE 330

CP000529_0095: domain 1 of 1, from 997 to 1069: score 56.0, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LRTPL++I g++ lL++ l + + +++l+e
CP000529_0 997 QLEAFSYSVSHDLRTPLSSIDGFSTLLEKSLTR--PDSAPLTERS-- 1039

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +i++ a+++ +Li+ +L l++
CP000529_0 1040 ----------RHCLARIRSGARQMGDLIDAMLALAQVSRS 1069

CP000529_4013: domain 1 of 1, from 308 to 376: score 55.5, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef++++sHELR PL +Irg++ l+ ++ +el++
CP000529_4 308 MKGEFISSVSHELRMPLVSIRGTLGLIAGGVA------GELPAMV-- 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++ + +erl rL+nd+ d + ie+g
CP000529_4 347 ----------KNLVGIATNNSERLIRLLNDIIDSETIESG 376

CP000529_0164: domain 1 of 1, from 372 to 440: score 54.4, E = 4.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+++++H+L+ PL +++g+++lL++ + ++l e+
CP000529_0 372 ELDAFARTIAHDLKAPLVSVIGFSQLLQN------RHADTLKEDG-- 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i r+a+++ +L+ndlL lsr
CP000529_0 411 ----------VRLIARIGRSARQMASLVNDLLALSRVSKT 440

CP000529_3472: domain 1 of 1, from 587 to 655: score 54.2, E = 5.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL++I g+ +lL ++l ++ +++
CP000529_3 587 ELEAFSYSVSHDLRAPLSTINGFGSLLAKQLA------GDGNDKM-- 625

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+++i++ + ++ +Li+dlL l++
CP000529_3 626 ----------RHYVSRIQQGVAQMGQLIEDLLSLAQVART 655

CP000529_3078: domain 1 of 1, from 217 to 283: score 53.4, E = 8.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELR PLta+++ a++L++ ++++ r
CP000529_3 217 TQKNFVADAAHELRSPLTALKLQAQTLRR---------LDADPAAR- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ + ++r r +++lL l+r eag
CP000529_3 254 ----------EAGIARLNQGIDRAIRGVEQLLLLAREEAG 283

CP000529_4012: domain 1 of 1, from 190 to 258: score 52.8, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f +++H+LR PL++I g+++lL++ + + ++e
CP000529_4 190 ELEAFSYSVAHDLRSPLNSIDGFSHLLQKSV-------SGDTAERS- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl++i+ ++++ +L + lL l+++
CP000529_4 229 ----------RHYLSRIRAGVRQMGELTDGLLSLAQLSRT 258

CP000529_0845: domain 1 of 1, from 396 to 462: score 51.3, E = 3.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L++I+ +elL+ +l+ e +
CP000529_0 396 ALGQLTGGVAHDFNNLLAVISSSVELLRS---------NKLPVERH- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ i++ + r +L +lL ++r e
CP000529_0 433 ----------GYYLDLIYDTVGRAVKLTGQLLAFARQEPL 462

CP000529_3795: domain 1 of 1, from 225 to 287: score 50.4, E = 6.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +la++sH+LR PL+ Ir++aelL + ++ +
CP000529_3 225 ARDMMLAGISHDLRSPLSRIRMAAELLPD-------------APGV- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +i r ++ +rL+ +Ldl+r+ a+
CP000529_3 258 ----------RDKQASIVRNVQAADRLVGAFLDLARASAE 287

CP000529_0445: domain 1 of 1, from 946 to 1018: score 49.7, E = 9.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL++I g++ lL ++l ++ ++e++++
CP000529_0 946 ELEAFSYSVSHDLRSPLNTIDGFSRLLAKQLA--QQLEGEADAKV-- 988

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl +i+ + ++ +Li+dlL ls+
CP000529_0 989 ----------THYLARIQAGVAQMGQLIEDLLSLSQVTRA 1018

CP000529_0355: domain 1 of 1, from 548 to 616: score 49.2, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LR PL++I ++++lLl+ + q+
CP000529_0 548 ELESFAYSVSHDLRSPLNTIHAFSQLLLK-----------IDGGQIS 583

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + yl++i ++++ +Li+ lL l+++ +
CP000529_0 584 DKG-------KHYLDRIGVGVKQMGDLIEGLLALAQLSRE 616

CP000529_3656: domain 1 of 1, from 239 to 304: score 49.0, E = 1.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ +++H+LRTPL++++ +el+l e+ +++ + r
CP000529_3 239 QEKRFINDAAHQLRTPLAGLINQTELALGES-------DAALIKAR- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++ a+r +L+n+lL l+r +++
CP000529_3 278 -------------LHKVHAGAQRSAHLVNQLLALARSGSE 304

CP000529_3839: domain 1 of 1, from 246 to 311: score 47.8, E = 3.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++++ ++HELRTPL++I + a L+ l++e +
CP000529_3 246 RERQLASEIAHELRTPLASIALQAASLKG----------VLPAEAQ- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ i +a r + i +lL l+r ++
CP000529_3 282 ----------AAALQQIGADALRAGHVIGQLLALARTGQS 311

CP000529_4011: domain 1 of 1, from 190 to 258: score 47.8, E = 3.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LRTPL+ + +++ lL +el + ++++
CP000529_4 190 ELEAFSYSVSHDLRTPLSIMNAFSNLLAREL-------GGHASKKV- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl++i+ +a +Li+dlL l++
CP000529_4 229 ----------LHYLSRIQASAVVGGQLIEDLLSLAQVSRA 258

CP000529_1220: domain 1 of 1, from 254 to 317: score 46.9, E = 5.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++ +H+LRTPL++++ ++ +l+ +++++
CP000529_1 254 NQKRFVRDTAHQLRTPLAVLKVQVQSALR---------GDMDA---- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l i + ++r L n++L l++ e+
CP000529_1 288 ----------HEALADISQTVDRATLLANQMLALAKVEQL 317

CP000529_2631: domain 1 of 1, from 685 to 753: score 45.9, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL++I g++ lL++ ++ l e+
CP000529_2 685 ELETFSYSVSHDLRSPLNTIDGFSTLLER-------TSGSLVGEKG- 723

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl++i+ ++++ +Li+ lL l+++
CP000529_2 724 ----------LHYLSRIRAGTRQMGDLIEGLLSLAKLSRD 753

CP000529_0148: domain 1 of 1, from 182 to 243: score 44.3, E = 3.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +lan+sHELR PL+ Ir+ +el+ ++s++q
CP000529_0 182 SHKSLLANASHELRSPLARIRMGLELMGV----------DKSSPQ-- 216

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
i r++ l++Li+++L sr+++
CP000529_0 217 -------------RMEISRSIGELDQLIDEILLASRLDTK 243

CP000529_1060: domain 1 of 1, from 169 to 242: score 43.4, E = 6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ ++HEL TPL+++ + ++l + eld + +e +
CP000529_1 169 MRDDFMSVVAHELLTPLNTLFLETQLRKLELD------RNHPEMFQK 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p L ++++ + +++++++ +Li+d+Ld ri ++
CP000529_1 210 PGL-------ADMFGRDQQQIQSMVKLIDDILDVGRISHN 242

CP000529_2523: domain 1 of 1, from 247 to 306: score 42.0, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ + ++++
CP000529_2 247 DRVVMLAGISHDLRTPLARLRLETEM------------SVADPDA-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +++ +l+++i+ +Ld++r e
CP000529_2 280 -------------REHMANDIAQLDAIIDKFLDYARPEPA 306

CP000529_2714: domain 1 of 1, from 232 to 294: score 36.0, E = 7.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ +l ++sHELR PLt r+++elL e ++e
CP000529_2 232 AKRGLLLAISHELRSPLTRARLNTELLPE------------TAEV-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +lr++ +++L+ lL+ +r+ +
CP000529_2 265 ----------QPARDALLRDLALMRDLVTGLLESERLASR 294

CP000529_1935: domain 1 of 1, from 211 to 306: score 35.3, E = 1.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldk..v.lagdtelsee
++++++a+++HEL++P++ ++g++++L ++ d+ ++ a ++ +
CP000529_1 211 SLGRLVAGVAHELNNPISFVLGNVHALSRYCDRlrQyVAAVHAGESS 257

qrlpeLR..l....edpeyreyletilreaerllrLindlLdlsrieag<
++l eLR +l+ ++ ++e l+ a+r +++n l +s ++ +
CP000529_1 258 EQLEELRarLridhMLNDLPSLIEGTLEGAQRTANIVNGLKRFSAMDPE 306

-*

CP000529_1 - -

CP000529_3715: domain 1 of 1, from 439 to 509: score 34.4, E = 2.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e +++l+HEL++PL a++ +a Ll+++ + ++l+ ++
CP000529_3 439 AVGEVASTLAHELNQPLGALSSFANGLLNRM-----RAGTLTLAEV- 479

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++r ae r i+++ ++r ++
CP000529_3 480 ----------TPVVERMERLAEKAGRVIQRVNAFARRQEM 509

CP000529_3252: domain 1 of 1, from 311 to 377: score 34.0, E = 2.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ Lt+++g++ L e++ + +++
CP000529_3 311 AVGQLTGGLAHDFNNLLTVVIGNLVSLHERY--------PDDPDI-- 347

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+ +l++++r +Li +lL ++r +
CP000529_3 348 ----------GEYVAPALKASRRGASLIKRLLAFARKQPL 377

CP000529_1763: domain 1 of 1, from 604 to 674: score 32.1, E = 9.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PLtaI y+ + + + s +++
CP000529_1 604 TMGEMASSVAHELNQPLTAINNYCNGMVSRI-----KANQISNDDL- 644

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le+ ++a r ++i++++ + + ++
CP000529_1 645 ----------LVALEKTAKQAWRAGQIIQRIRAFVKRSEP 674

CP000529_2645: domain 1 of 1, from 390 to 456: score 28.5, E = 9.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +l HEL+TPL+ I+++a L + + l+
CP000529_2 390 LQERFMTMLMHELKTPLAIIQLAATSLGR---------HMLPGSG-- 425

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++R + i r+++ l++Li++ + +i++g
CP000529_2 426 DAAR---------IMNINRSVDDLNALIERCAQADQIDQG 456

CP000529_3697: domain 1 of 1, from 150 to 232: score 28.3, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldk...........vla
a++e l l+HEL+TPL++++gy e+L++ +++ ++ + +++++
CP000529_3 150 AMRETLGFLAHELNTPLATVLGYMEALKD---RhrvppadaapgLAH 193

gdtelseeqrlpeLRledpeyreyletilreaerllrLindlLdlsriea
+ +++ ++ +++ ++r + + +L+ + + +r+
CP000529_3 194 IAEKRAGDT------------LAMIQAAERRTLYAMSLVATFVQSARAAY 231

g<-*
+
CP000529_3 232 P 232


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 8 0|=
-13 30 3|*==
-12 162 93|======*=====
-11 361 484|========================== *
-10 696 898|================================================== *
-9 785 927|========================================================= *
-8 750 694|=================================================*====
-7 535 437|===============================*=======
-6 337 251|=================*=======
-5 168 138|=========*==
-4 92 73|=====*=
-3 54 39|==*=
-2 33 20|=*=
-1 7 10|*
0 8 5|*
1 2 2|*
2 3 1|*
3 2 0|=
4 0 0|
5 0 0|
> 6 51 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 230.6259
P(chi-square) = 2.796e-312

Total sequences searched: 4084

Whole sequence top hits:
tophits_s report:
Total hits: 46
Satisfying E cutoff: 46
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 46
Satisfying E cutoff: 46
Total memory: 39K


Acknowledgements:

This research is funded by:

Developed by: