Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
32 projects found  

3 accessions found for Campylobacter jejuni subsp. jejuni 81-176  

Data for CP000538  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000538.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000538_0845 CDS_829969-828680 46.0 4.4e-13 1
CP000538_0763 CDS_743481-744500 38.6 5.4e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000538_0845 1/1 224 291 .. 1 87 [] 46.0 4.4e-13
CP000538_0763 1/1 131 195 .. 1 87 [] 38.6 5.4e-11

Alignments of top-scoring domains:
CP000538_0845: domain 1 of 1, from 224 to 291: score 46.0, E = 4.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++++sHEL++PL++I + +e+L++ ++l ++++
CP000538_0 224 QLASVISAISHELKNPLSVIDLSLEILKD---------EKLEDKKLK 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le+i r++ l++L l + ++
CP000538_0 262 ----------KELLEKISRQSIKLNALTHKLNFVFNLNSE 291

CP000538_0763: domain 1 of 1, from 131 to 195: score 38.6, E = 5.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+l+HE+R+P+ +I+++a++L + +se ++
CP000538_0 131 SMGSVAAHLAHEIRNPIGSISLLASTLFA-----------RSELKN- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++++ r +r++n L +++ +
CP000538_0 166 ----------KHIVLEIQKAIARVERIVNSTLLFTKGVHI 195


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 2 0|=
-14 8 0|==
-13 31 1|*=====
-12 87 37|======*========
-11 174 195|============================= *
-10 269 363|============================================= *
-9 325 375|======================================================= *
-8 273 281|==============================================*
-7 198 177|=============================*===
-6 125 101|================*====
-5 74 55|=========*===
-4 36 29|====*=
-3 24 15|==*=
-2 9 8|=*
-1 2 4|*
0 3 2|*
1 5 1|*
2 1 0|=
3 1 0|=
4 0 0|
5 0 0|
> 6 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 117.2055
P(chi-square) = 1.865e-20

Total sequences searched: 1653

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: