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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Halorhodospira halophila SL1  

Data for CP000544  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000544.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000544_2120 CDS_2360192-2357301 102.3 7.2e-29 1
CP000544_1873 CDS_2096159-2098957 100.1 2.9e-28 1
CP000544_2119 CDS_2352393-2357324 97.3 1.8e-27 1
CP000544_0360 CDS_421885-419270 93.8 1.8e-26 1
CP000544_0365 CDS_428444-432244 92.3 4.8e-26 1
CP000544_2118 CDS_2350265-2352307 92.1 5.5e-26 1
CP000544_1099 CDS_1215054-1213741 91.0 1.2e-25 1
CP000544_0335 CDS_388877-386904 88.7 5e-25 1
CP000544_0635 CDS_726838-729210 88.3 6.5e-25 1
CP000544_1105 CDS_1221788-1220280 86.2 2.5e-24 1
CP000544_0097 CDS_114321-112981 80.8 8.7e-23 1
CP000544_0310 CDS_352569-350650 80.5 1.1e-22 1
CP000544_1612 CDS_1793861-1795762 78.6 3.7e-22 1
CP000544_1300 CDS_1436320-1438338 77.7 6.5e-22 1
CP000544_1196 CDS_1321239-1320166 66.6 9.2e-19 1
CP000544_1311 CDS_1446291-1447778 52.0 1.3e-14 1
CP000544_1862 CDS_2081049-2084006 44.7 1.4e-12 1
CP000544_1392 CDS_1534079-1532769 34.5 1.1e-09 1
CP000544_0366 CDS_433772-432192 34.1 1.5e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000544_2120 1/1 391 456 .. 1 87 [] 102.3 7.2e-29
CP000544_1873 1/1 680 747 .. 1 87 [] 100.1 2.9e-28
CP000544_2119 1/1 927 992 .. 1 87 [] 97.3 1.8e-27
CP000544_0360 1/1 505 570 .. 1 87 [] 93.8 1.8e-26
CP000544_0365 1/1 528 593 .. 1 87 [] 92.3 4.8e-26
CP000544_2118 1/1 306 372 .. 1 87 [] 92.1 5.5e-26
CP000544_1099 1/1 201 269 .. 1 87 [] 91.0 1.2e-25
CP000544_0335 1/1 280 345 .. 1 87 [] 88.7 5e-25
CP000544_0635 1/1 232 297 .. 1 87 [] 88.3 6.5e-25
CP000544_1105 1/1 127 194 .. 1 87 [] 86.2 2.5e-24
CP000544_0097 1/1 205 272 .. 1 87 [] 80.8 8.7e-23
CP000544_0310 1/1 268 333 .. 1 87 [] 80.5 1.1e-22
CP000544_1612 1/1 266 333 .. 1 87 [] 78.6 3.7e-22
CP000544_1300 1/1 289 354 .. 1 87 [] 77.7 6.5e-22
CP000544_1196 1/1 129 186 .. 1 79 [. 66.6 9.2e-19
CP000544_1311 1/1 264 332 .. 1 87 [] 52.0 1.3e-14
CP000544_1862 1/1 756 821 .. 1 87 [] 44.7 1.4e-12
CP000544_1392 1/1 209 275 .. 1 87 [] 34.5 1.1e-09
CP000544_0366 1/1 143 208 .. 1 87 [] 34.1 1.5e-09

Alignments of top-scoring domains:
CP000544_2120: domain 1 of 1, from 391 to 456: score 102.3, E = 7.2e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++a+ g+++lLl+ tel+e q
CP000544_2 391 AKSEFLANMSHEIRTPMNAVVGLSQLLLD---------TELNERQ-- 426

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl++i+r+++ ll +ind+Ld+srie+g
CP000544_2 427 ----------LDYLKKIQRSSRMLLGIINDILDFSRIESG 456

CP000544_1873: domain 1 of 1, from 680 to 747: score 100.1, E = 2.9e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef++++sHELRTPLt+Ir++ e+Ll++ +e++++qr
CP000544_1 680 LKDEFVSMVSHELRTPLTSIRAFGEILLNN--------PEMDADQR- 717

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+le++ re+erl rLin++Ldls+ie+g
CP000544_1 718 ----------REFLEVVVRESERLTRLINQVLDLSKIESG 747

CP000544_2119: domain 1 of 1, from 927 to 992: score 97.3, E = 1.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTPL+a++g+++lLle t l+ q
CP000544_2 927 AKSEFLANMSHEIRTPLNAVIGLSQLLLE---------TSLDKRQ-- 962

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+++l++++ ll +ind+Ld+s+ie+g
CP000544_2 963 ----------QDHLNKVLSSSRMLLGIINDILDFSKIESG 992

CP000544_0360: domain 1 of 1, from 505 to 570: score 93.8, E = 1.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ fla++sH+LRTPL+aI g+++lL++ tel+++q
CP000544_0 505 DRRTFLAAVSHDLRTPLNAIYGFTDLLQA---------TELTPQQ-- 540

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyl ++++e ll+Li+ lLdlsr+e+g
CP000544_0 541 ----------REYLGLCRSASEKLLALIDTLLDLSRMESG 570

CP000544_0365: domain 1 of 1, from 528 to 593: score 92.3, E = 4.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++a++g+ +lL e t+l++ q
CP000544_0 528 AKSDFLANMSHEIRTPMNAVIGLGQLLIE---------TDLDPVQ-- 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y e+++++++ ll +ind+Ld+s+iea
CP000544_0 564 ----------RNYAEKMHNASRMLLGIINDILDYSKIEAD 593

CP000544_2118: domain 1 of 1, from 306 to 372: score 92.1, E = 5.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl ++sH+LRTPL+a++g+++lL e t+l++e+r
CP000544_2 306 AKSDFLNAVSHDLRTPLNALMGFSQLLAE---------TDLTPEER- 342

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y e +r +erl Li+ lL+lsr+++g
CP000544_2 343 ----------QRYAEHCRRGGERLHGLIDSLLELSRLQSG 372

CP000544_1099: domain 1 of 1, from 201 to 269: score 91.0, E = 1.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl+++sHELRTPL+a++g+a++L+ +++lse q
CP000544_1 201 AKSQFLSSMSHELRTPLNAVLGFAQILEQ------DPREPLSERQ-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ il +++ll+Li+d+Ldlsr eag
CP000544_1 240 ----------AGYVDQILGGGRHLLSLIDDILDLSRVEAG 269

CP000544_0335: domain 1 of 1, from 280 to 345: score 88.7, E = 5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ fla++sH+LRTPL+a+ g++ lL++ tel++eq
CP000544_0 280 DRTTFLAAVSHDLRTPLNAVVGFTGLLQD---------TELDAEQ-- 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+e + +++ ll L++ lL lsr+eag
CP000544_0 316 ----------RRYVELCRTASQTLLGLVDTLLSLSRLEAG 345

CP000544_0635: domain 1 of 1, from 232 to 297: score 88.3, E = 6.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+ HE+RTP++a++g ++lLl+ t+l+++q
CP000544_0 232 AKSEFLANMNHEIRTPMNAVLGRTQLLLD---------TDLDAQQ-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i+++++ ll +ind+Ld+s+ie+g
CP000544_0 268 ----------LDHLGKIHNSSKMLLGIINDILDISKIESG 297

CP000544_1105: domain 1 of 1, from 127 to 194: score 86.2, E = 2.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+++sHELRTPL+aI g+a+l+ + d+el+ +r
CP000544_1 127 AKSEFLSAMSHELRTPLNAIVGFAQLIYA--------DEELDTRTR- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl+ il+++ +l++L+ d+Ldl+rieag
CP000544_1 165 ----------NEYLRHILSAGWHLRDLVGDILDLARIEAG 194

CP000544_0097: domain 1 of 1, from 205 to 272: score 80.8, E = 8.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TPLt+I g ae + e el +eq
CP000544_0 205 IRRDFVANVSHELKTPLTVIYGVAEEMGE----------ELAPEQ-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p ++ ++ +++++ r++rL++dlL+lsr+e+g
CP000544_0 240 -------PAWAGSIRLLQDQSARMQRLVQDLLTLSRLETG 272

CP000544_0310: domain 1 of 1, from 268 to 333: score 80.5, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ fla++sH+LRTPL+aI g+++lL + +el+ eq
CP000544_0 268 DRNIFLAAISHDLRTPLNAIVGFTDLLAR---------SELDTEQ-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +++++ ll Li+ +L+lsr+eag
CP000544_0 304 ----------RHHVGLCRSASQTLLGLIDTVLELSRLEAG 333

CP000544_1612: domain 1 of 1, from 266 to 333: score 78.6, E = 3.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHELRTPL+aI g+a+lL ++ ++r
CP000544_1 266 AKSEFLAAMSHELRTPLNAITGFAQLLHQ--------TPPDETQDR- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le il+++ +l++Li d+ d+++ie+g
CP000544_1 304 ----------DQHLEQILSAGWHLRDLIGDVIDFAQIETG 333

CP000544_1300: domain 1 of 1, from 289 to 354: score 77.7, E = 6.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl ++sH+LRTPL+a++g++++L e t+lseeq
CP000544_1 289 IKTQFLNAVSHDLRTPLNALLGAIDMLSE---------TPLSEEQ-- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ r++e l+ Li+ lLdl+r+++g
CP000544_1 325 ----------RAHLSLGARAGEKLEGLIDMLLDLARLQHG 354

CP000544_1196: domain 1 of 1, from 129 to 186: score 66.6, E = 9.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++++l+HE+++PL ++rg+a+lL++ el+e ++
CP000544_1 129 AVQELIRGLAHEIKNPLGGLRGAAQLLEA----------ELPERDQ- 164

peLRledpeyreyletilreaerllrLindlL<-*
rey+++i+rea+rl++L++ lL
CP000544_1 165 ----------REYTQVIIREADRLQQLVDALL 186

CP000544_1311: domain 1 of 1, from 264 to 332: score 52.0, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l++ sHEL+TPL+a++ aelL++ ++ + + ++
CP000544_1 264 QRQRLLRHFSHELKTPLAAVLEGAELLRD---------PAFNGDPQR 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++++ ++ l+r+i++lL ++r ++
CP000544_1 302 ---------REEIADIVRENGHELRRQIDNLLRFARHGEA 332

CP000544_1862: domain 1 of 1, from 756 to 821: score 44.7, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+ +P+t+I +a+ L+ e +++ +
CP000544_1 756 SIGRLAAGVAHEIGNPVTGIDSLAQNLRH----------ESDPQLL- 791

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ il++++r++++++ l ++ +++
CP000544_1 792 ----------RESVDEILEQTRRINNIVQTLIGYAHAGNT 821

CP000544_1392: domain 1 of 1, from 209 to 275: score 34.5, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +a+++H+L TPL+++++ ++ L+ + +++ ++
CP000544_1 209 ALGTVAAGAAHQLGTPLSTMSMVVDELRQ---------ERRDDTEL- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ +++++ + + ++dl d +++
CP000544_1 246 ----------QQDLDLLRSQLAVCKETLEDLKDAGAAGSD 275

CP000544_0366: domain 1 of 1, from 143 to 208: score 34.1, E = 1.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + l+++ ELR+PL+a+r e L ++l++eq
CP000544_0 143 EHCRALSAIGRELRNPLSALRRCHERLDS---------AALDAEQ-- 178

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l ++ +++ ll++i+ +Ld +++++
CP000544_0 179 ----------RHCLALARIASDTLLAQIDAILDQAWADSS 208


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 3 0|=
-13 13 1|*=
-12 57 55|======*=
-11 180 285|======================= *
-10 361 529|============================================== *
-9 446 546|======================================================== *
-8 423 409|===================================================*=
-7 343 257|================================*==========
-6 221 148|==================*=========
-5 141 81|==========*=======
-4 93 43|=====*======
-3 37 23|==*==
-2 27 12|=*==
-1 21 6|*==
0 6 3|*
1 6 1|*
2 5 0|=
3 2 0|=
4 1 0|=
5 0 0|
6 0 0|
> 7 21 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 335.7422
P(chi-square) = 0

Total sequences searched: 2407

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: