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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for Burkholderia mallei NCTC 10229  

Data for CP000545  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000545.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000545_1348 CDS_1434808-1436208 65.4 3e-19 1
CP000545_0169 CDS_155925-157403 54.6 4.4e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000545_1348 1/1 253 323 .. 1 70 [] 65.4 3e-19
CP000545_0169 1/1 285 353 .. 1 70 [] 54.6 4.4e-16

Alignments of top-scoring domains:
CP000545_1348: domain 1 of 1, from 253 to 323: score 65.4, E = 3e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe...eareal
ERaR+ARELHD+++Q++ ++kl+ e a+ +l + p+++++a++al
CP000545_1 253 ERARLARELHDGISQMMVSAKLMCESALERL--AHLPArenAAQAAL 297

deirelarealaevRrllgdLRpaal<-*
+ + ++l+evRr+ ++LRp+ l
CP000545_1 298 SKGIARLGDTLREVRRISHALRPTML 323

CP000545_0169: domain 1 of 1, from 285 to 353: score 54.6, E = 4.4e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
E +RIARELHD +gQ+L+a+k+ + l+ l kd++ +l
CP000545_0 285 EKTRIARELHDDLGQQLTALKMAVTLVDNEL---KDAGwaSRTSRLP 328

eirelarealaevRrllgdLRpaal<-*
++ +l+ + l+ vRr++ dLRp l
CP000545_0 329 NVYALIGQLLDSVRRIAADLRPVML 353


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 13 0|===
-13 41 0|=======
-12 108 24|===*==============
-11 122 199|===================== *
-10 242 462|========================================= *
-9 325 525|======================================================= *
-8 292 405|================================================= *
-7 276 254|==========================================*===
-6 193 144|=======================*=========
-5 246 77|============*============================
-4 116 40|======*=============
-3 74 20|===*=========
-2 43 10|=*======
-1 35 5|*=====
0 15 2|*==
1 9 1|*=
2 6 0|=
3 3 0|=
4 4 0|=
5 2 0|=
6 7 0|==
7 0 0|
8 2 0|=
9 0 0|
> 10 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1457.4209
P(chi-square) = 0

Total sequences searched: 2177

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: