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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

2 accessions found for Burkholderia mallei NCTC 10247  

Data for CP000547  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000547.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000547_2327 CDS_2292195-2293595 65.4 3.3e-19 1
CP000547_1410 CDS_1399367-1397889 54.6 4.8e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000547_2327 1/1 253 323 .. 1 70 [] 65.4 3.3e-19
CP000547_1410 1/1 285 353 .. 1 70 [] 54.6 4.8e-16

Alignments of top-scoring domains:
CP000547_2327: domain 1 of 1, from 253 to 323: score 65.4, E = 3.3e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe...eareal
ERaR+ARELHD+++Q++ ++kl+ e a+ +l + p+++++a++al
CP000547_2 253 ERARLARELHDGISQMMVSAKLMCESALERL--AHLPArenAAQAAL 297

deirelarealaevRrllgdLRpaal<-*
+ + ++l+evRr+ ++LRp+ l
CP000547_2 298 SKGIARLGDTLREVRRISHALRPTML 323

CP000547_1410: domain 1 of 1, from 285 to 353: score 54.6, E = 4.8e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
E +RIARELHD +gQ+L+a+k+ + l+ l kd++ +l
CP000547_1 285 EKTRIARELHDDLGQQLTALKMAVTLVDNEL---KDAGwaSRTSRLP 328

eirelarealaevRrllgdLRpaal<-*
++ +l+ + l+ vRr++ dLRp l
CP000547_1 329 NVYALIGQLLDSVRRIAADLRPVML 353


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 14 0|==
-13 44 0|=======
-12 117 26|===*=============
-11 143 217|===================== *
-10 268 505|======================================= *
-9 378 573|====================================================== *
-8 312 442|============================================= *
-7 305 278|=======================================*====
-6 199 157|======================*======
-5 263 84|===========*==========================
-4 113 44|======*==========
-3 79 22|===*========
-2 45 11|=*=====
-1 38 5|*=====
0 17 2|*==
1 13 1|*=
2 5 0|=
3 4 0|=
4 4 0|=
5 2 0|=
6 7 0|=
7 0 0|
8 2 0|=
9 0 0|
> 10 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1461.5057
P(chi-square) = 0

Total sequences searched: 2376

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: