Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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1 accessions found for   

Data for CP000552  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000552.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000552_1501 CDS_1337128-1339197 83.0 1.6e-23 1
CP000552_0303 CDS_278189-279325 27.3 1e-07 1
CP000552_1166 CDS_1022666-1021548 26.8 1.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000552_1501 1/1 416 484 .. 1 87 [] 83.0 1.6e-23
CP000552_0303 1/1 131 197 .. 1 87 [] 27.3 1e-07
CP000552_1166 1/1 140 196 .. 1 80 [. 26.8 1.4e-07

Alignments of top-scoring domains:
CP000552_1501: domain 1 of 1, from 416 to 484: score 83.0, E = 1.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++n+sHELRTPL I+ y+e+L + ++d+ +eeq
CP000552_1 416 AQNRFISNVSHELRTPLFNIKSYVETLYD------LKDQLSNEEQ-- 454

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++ +e++rl rL+nd+Ldlsr+e+g
CP000552_1 455 ----------LEFLGIANSETDRLTRLVNDVLDLSRLESG 484

CP000552_0303: domain 1 of 1, from 131 to 197: score 27.3, E = 1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + + H+LR+PL+aIr+ya+lL ++l ++l++ ++
CP000552_0 131 VLKNQVDIVIHQLRNPLAAIRTYAKLLVKRLG------SDLGSIEI- 170

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ e +++++ ++ + +l +
CP000552_0 171 -------------VESMMVEQNQINQYVDSFEQLNKPIKL 197

CP000552_1166: domain 1 of 1, from 140 to 196: score 26.8, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l++++HELRTPLta ++++ ++l+ ++
CP000552_1 140 SQERLLRMVAHELRTPLTAATLAIQS------------QKLGQIDI- 173

peLRledpeyreyletilreaerllrLindlLd<-*
+++ ++i+r +e ++ L +dlL+
CP000552_1 174 ----------KKLQDVIKRRLEEIELLSQDLLE 196


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 21 0|===
-13 77 1|*==========
-12 171 43|======*==================
-11 211 225|=============================== *
-10 378 419|====================================================== *
-9 328 432|=============================================== *
-8 283 324|========================================= *
-7 186 204|=========================== *
-6 120 117|================*=
-5 57 64|=========*
-4 19 34|=== *
-3 17 18|==*
-2 12 9|=*
-1 9 4|*=
0 4 2|*
1 4 1|*
2 1 0|=
3 1 0|=
4 1 0|=
> 5 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 418.6398
P(chi-square) = 0

Total sequences searched: 1906

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: