Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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39 projects found  

1 accessions found for Prochlorococcus marinus str. MIT 9303  

Data for CP000554  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000554.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000554_0541 CDS_528398-526341 86.1 3.3e-24 1
CP000554_2061 CDS_1838763-1837273 78.3 5.5e-22 1
CP000554_1103 CDS_994789-993704 67.4 7e-19 1
CP000554_2463 CDS_2185619-2186758 33.5 2.8e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000554_0541 1/1 415 483 .. 1 87 [] 86.1 3.3e-24
CP000554_2061 1/1 265 332 .. 1 87 [] 78.3 5.5e-22
CP000554_1103 1/1 136 200 .. 1 87 [] 67.4 7e-19
CP000554_2463 1/1 132 198 .. 1 87 [] 33.5 2.8e-09

Alignments of top-scoring domains:
CP000554_0541: domain 1 of 1, from 415 to 483: score 86.1, E = 3.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s+f++n+sHELRTPL I+ y+e+L + + + lsee++
CP000554_0 415 AQSRFISNVSHELRTPLFNIKSYVETLHDLG-------DQLSEEEK- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ++ +e++rl rL+nd+Ldlsr+e+g
CP000554_0 454 ----------KEFLGVANSETDRLARLVNDVLDLSRLESG 483

CP000554_2061: domain 1 of 1, from 265 to 332: score 78.3, E = 5.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +lsHELRTP+t I+gy++ l+++ ++lse+q
CP000554_2 265 RQRKFANALSHELRTPITLIIGYTSRVLRRS-------GNLSEDQ-- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +i++e++rl rLi dlLd++r e+g
CP000554_2 303 ----------RHQLTIIDDETRRLGRLITDLLDIAREESG 332

CP000554_1103: domain 1 of 1, from 136 to 200: score 67.4, E = 7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l++++HEL+TPLta+++ ++ L+ + ++
CP000554_1 136 QQERWLSDVAHELKTPLTALILVSDRLEQ----------IIPGKD-- 170

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++re++rl+++++dl +lsr+e+
CP000554_1 171 ----------SVLVDRMQRELQRLQKMLEDLFELSRLENK 200

CP000554_2463: domain 1 of 1, from 132 to 198: score 33.5, E = 2.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e ++ + H+LR+PL+a+r+ya+lL + + e ++ +
CP000554_2 132 EQREQISLMVHQLRNPLAALRTYAQLLMK--------RLEPDSRH-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ +l+e +l+r i+ l ++ + +
CP000554_2 169 ----------RTLITGLLSEQAQLDRYISSLDQIGQDNLP 198


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 3 0|=
-14 58 0|=======
-13 125 2|*=============
-12 258 68|=======*=====================
-11 386 355|=======================================*===
-10 483 659|====================================================== *
-9 490 680|======================================================= *
-8 408 509|============================================== *
-7 340 321|===================================*==
-6 186 184|====================*
-5 92 101|===========*
-4 69 54|=====*==
-3 42 28|===*=
-2 23 15|=*=
-1 15 7|*=
0 7 4|*
1 3 2|*
2 0 1|*
3 1 0|=
4 0 0|
> 5 8 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 670.4687
P(chi-square) = 0

Total sequences searched: 2997

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: