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Classification of phyla is from NCBI page
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2 accessions found for Methylibium petroleiphilum PM1  

Data for CP000555  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000555.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000555_0812 CDS_855467-852540 116.0 1.5e-32 2
CP000555_2850 CDS_3046384-3043379 99.3 7.8e-28 1
CP000555_3577 CDS_3796637-3793176 89.2 6e-25 1
CP000555_0670 CDS_705817-709329 88.7 8.1e-25 1
CP000555_0099 CDS_95801-92985 80.7 1.5e-22 1
CP000555_1278 CDS_1375532-1376914 79.7 2.9e-22 1
CP000555_3158 CDS_3365410-3368643 79.6 3e-22 1
CP000555_3681 CDS_3900685-3903186 78.4 6.6e-22 1
CP000555_2487 CDS_2655095-2659048 76.5 2.3e-21 1
CP000555_1377 CDS_1483873-1486068 76.2 2.8e-21 1
CP000555_1149 CDS_1232405-1230576 66.7 1.4e-18 1
CP000555_0136 CDS_141269-142753 64.3 6.6e-18 1
CP000555_0077 CDS_71330-72859 63.2 1.3e-17 1
CP000555_2496 CDS_2670437-2667717 62.6 2e-17 1
CP000555_0749 CDS_777957-776164 61.4 4.5e-17 1
CP000555_2068 CDS_2220736-2219615 60.0 1.1e-16 1
CP000555_1630 CDS_1760980-1762341 59.4 1.6e-16 1
CP000555_2734 CDS_2918043-2919134 57.8 4.7e-16 1
CP000555_1167 CDS_1252441-1250384 52.8 1.2e-14 1
CP000555_3159 CDS_3370037-3368655 52.4 1.6e-14 1
CP000555_0274 CDS_296634-298979 52.3 1.7e-14 1
CP000555_3208 CDS_3423786-3421858 50.7 4.8e-14 1
CP000555_2634 CDS_2818250-2816760 47.6 3.5e-13 1
CP000555_3140 CDS_3347718-3349040 47.4 4.1e-13 1
CP000555_2747 CDS_2933877-2935241 47.3 4.3e-13 1
CP000555_1573 CDS_1699547-1698243 40.4 3.8e-11 1
CP000555_2530 CDS_2706760-2706083 37.9 2e-10 1
CP000555_2123 CDS_2280667-2283255 36.5 4.9e-10 1
CP000555_0208 CDS_224727-226853 36.4 5.5e-10 1
CP000555_3729 CDS_3957405-3954652 35.9 7.5e-10 1
CP000555_2789 CDS_2980105-2978663 35.0 1.3e-09 1
CP000555_0914 CDS_969529-970560 33.0 4.9e-09 1
CP000555_2851 CDS_3046609-3047883 31.4 1.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000555_2850 1/1 338 403 .. 1 87 [] 99.3 7.8e-28
CP000555_3577 1/1 700 766 .. 1 87 [] 89.2 6e-25
CP000555_0670 1/1 708 774 .. 1 87 [] 88.7 8.1e-25
CP000555_0099 1/1 565 633 .. 1 87 [] 80.7 1.5e-22
CP000555_1278 1/1 209 275 .. 1 87 [] 79.7 2.9e-22
CP000555_3158 1/1 698 766 .. 1 87 [] 79.6 3e-22
CP000555_3681 1/1 456 524 .. 1 87 [] 78.4 6.6e-22
CP000555_0812 1/2 180 247 .. 1 87 [] 77.4 1.3e-21
CP000555_2487 1/1 942 1009 .. 1 87 [] 76.5 2.3e-21
CP000555_1377 1/1 339 405 .. 1 87 [] 76.2 2.8e-21
CP000555_1149 1/1 240 306 .. 1 87 [] 66.7 1.4e-18
CP000555_0136 1/1 257 324 .. 1 87 [] 64.3 6.6e-18
CP000555_0077 1/1 248 318 .. 1 87 [] 63.2 1.3e-17
CP000555_2496 1/1 663 727 .. 1 87 [] 62.6 2e-17
CP000555_0749 1/1 358 426 .. 1 87 [] 61.4 4.5e-17
CP000555_2068 1/1 149 214 .. 1 87 [] 60.0 1.1e-16
CP000555_1630 1/1 222 288 .. 1 87 [] 59.4 1.6e-16
CP000555_2734 1/1 140 208 .. 1 87 [] 57.8 4.7e-16
CP000555_1167 1/1 453 521 .. 1 87 [] 52.8 1.2e-14
CP000555_3159 1/1 233 298 .. 1 87 [] 52.4 1.6e-14
CP000555_0274 1/1 538 610 .. 1 87 [] 52.3 1.7e-14
CP000555_3208 1/1 409 469 .. 1 82 [. 50.7 4.8e-14
CP000555_2634 1/1 271 335 .. 1 87 [] 47.6 3.5e-13
CP000555_3140 1/1 228 293 .. 1 87 [] 47.4 4.1e-13
CP000555_2747 1/1 229 295 .. 1 87 [] 47.3 4.3e-13
CP000555_1573 1/1 223 282 .. 1 87 [] 40.4 3.8e-11
CP000555_0812 2/2 749 819 .. 1 87 [] 38.6 1.2e-10
CP000555_2530 1/1 1 70 [. 2 87 .] 37.9 2e-10
CP000555_2123 1/1 613 683 .. 1 87 [] 36.5 4.9e-10
CP000555_0208 1/1 458 533 .. 1 87 [] 36.4 5.5e-10
CP000555_3729 1/1 551 614 .. 1 87 [] 35.9 7.5e-10
CP000555_2789 1/1 233 328 .. 1 87 [] 35.0 1.3e-09
CP000555_0914 1/1 125 192 .. 1 87 [] 33.0 4.9e-09
CP000555_2851 1/1 213 273 .. 9 87 .] 31.4 1.4e-08

Alignments of top-scoring domains:
CP000555_2850: domain 1 of 1, from 338 to 403: score 99.3, E = 7.8e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+a++sHE+RTP+++++g++elLl t+l++ q
CP000555_2 338 AKSQFMATMSHEIRTPMNGVLGMTELLLG---------TALDSRQ-- 373

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + ++r++e+ll++ind+Ld+s+ieag
CP000555_2 374 ----------RRFAQAVYRSGESLLEIINDILDFSKIEAG 403

CP000555_3577: domain 1 of 1, from 700 to 766: score 89.2, E = 6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++ +a++ HELRTPL++I+gya++Ll+ d+ ls+
CP000555_3 700 AKTRYVAGMTHELRTPLNSILGYAQILLK--------DGVLSAAP-- 736

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++ti+r++e+l Li+ lLdl+rieag
CP000555_3 737 ----------REAVHTIRRSGEHLMGLIDGLLDLARIEAG 766

CP000555_0670: domain 1 of 1, from 708 to 774: score 88.7, E = 8.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL++I+gya+lL+e d+++++
CP000555_0 708 AKSRYITAISHELRTPLNSILGYAQLLEE--------DEAMPPHR-- 744

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+r +++l +Li+d Ldl+rie+g
CP000555_0 745 ----------AQAVRVIRRGGDHLASLIEDTLDLARIESG 774

CP000555_0099: domain 1 of 1, from 565 to 633: score 80.7, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+ +sHELRTPL++I+g+++l+ +d++l ++q
CP000555_0 565 AKSEFLSRVSHELRTPLNGILGFTQLMAL------DEDHPLAAPQ-- 603

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +++r+++rll+Lind+L++srie+
CP000555_0 604 ----------AQRLASVQRAGNRLLNLINDVLEISRIESA 633

CP000555_1278: domain 1 of 1, from 209 to 275: score 79.7, E = 2.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHE+RTPLt+++g++e++ + +l+e +
CP000555_1 209 MRRDFVANVSHEIRTPLTVLSGFIETMST---------LPLTEVES- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l + ++a+r++ L++dlL+l+++e
CP000555_1 246 ----------RRVLVLMSQQAQRMQTLVSDLLTLAQLEGS 275

CP000555_3158: domain 1 of 1, from 698 to 766: score 79.6, E = 3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efl+ +sHELRTPL+a++g+a+lL ++e e +
CP000555_3 698 AKNEFLSRMSHELRTPLNAMLGFAQLLDL-------DRGEPLHERH- 736

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + i++++ +ll++ind+Ldlsrie+g
CP000555_3 737 ----------RMWVTQIQQAGWHLLEMINDVLDLSRIESG 766

CP000555_3681: domain 1 of 1, from 456 to 524: score 78.4, E = 6.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efl+ +sHELRTPL+a++g+++lLl +++l + q
CP000555_3 456 AKTEFLSRMSHELRTPLNAVLGFTQLLLG------DPSAPLQDGQ-- 494

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l i+r++++ll++i d+Ldlsrie+g
CP000555_3 495 ----------RARLGHIERAGQHLLAMIGDVLDLSRIETG 524

CP000555_0812: domain 1 of 2, from 180 to 247: score 77.4, E = 1.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+an+sHELRTPL+ I+g +e Ll+ ++ ls+ q
CP000555_0 180 AKSDFFANVSHELRTPLALILGPSESLLA-------TSEGLSDAQ-- 217

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++i+r a l + +ndlLdl++ +ag
CP000555_0 218 ----------RRDLRVIQRNAAMLMKHVNDLLDLAKFDAG 247

CP000555_2487: domain 1 of 1, from 942 to 1009: score 76.5, E = 2.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl+ +sHE+RTPL+a++g+a+lL++ ++++ r
CP000555_2 942 AKSAFLSRMSHEMRTPLNAVIGFAQLLRK---------DDAPGGAR- 978

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + il+++e+ll+L+nd+Ldl + e+g
CP000555_2 979 ---------VAQFGDHILQAGEHLLALVNDVLDLQQVEEG 1009

CP000555_1377: domain 1 of 1, from 339 to 405: score 76.2, E = 2.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sHE+RTPL++++g+a++ + ++ +
CP000555_1 339 SKSLFLANISHEIRTPLNGVLGFAQIGYR-------------DPSVV 372

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
pe+ r+ + +il++++ l+ ++nd+Ld+s+ieag
CP000555_1 373 PEA-------RQKFARILESGKLLQGILNDVLDMSKIEAG 405

CP000555_1149: domain 1 of 1, from 240 to 306: score 66.7, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a++sH+LR+PL+a+ ++ae+L+ +++e++
CP000555_1 240 AKTQFFAAASHDLRQPLHAMGLFAEALRS---------KSRGDEEV- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++i ++++ l+ L +lLd+++i++g
CP000555_1 277 ----------THLVNSINSSVDALEGLFGELLDITKIDTG 306

CP000555_0136: domain 1 of 1, from 257 to 324: score 64.3, E = 6.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l HEL+ PL+aIrg+aelL + +++++e +r
CP000555_0 257 YVADYVQTLTHELKSPLSAIRGAAELLND--------EPAMPEADR- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+re+ r+++L++++++l+ +e+
CP000555_0 295 ----------QRFLGNIQRETLRIQELVDRMMELAALESR 324

CP000555_0077: domain 1 of 1, from 248 to 318: score 63.2, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fla+++H+L+TPL+++r+ ae++++e d +e+ +e +
CP000555_0 248 TQRRFLADAAHQLKTPLAGLRTQAEIAQREID-----AGEREPEAL- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i +++r +++n+lL ++r+e
CP000555_0 289 ----------KRSLQQIALSSQRAAHMVNQLLAMARAEDR 318

CP000555_2496: domain 1 of 1, from 663 to 727: score 62.6, E = 2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsH+LRTPL+a+ g+a++L + ++++e q
CP000555_2 663 LRNSLLSALSHDLRTPLAALYGLADTLVD---------GTQGEAQ-- 698

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + + ea+rl++++ lLd++r+++g
CP000555_2 699 -----------EMARALGAEARRLNAMVGKLLDMARLQSG 727

CP000555_0749: domain 1 of 1, from 358 to 426: score 61.4, E = 4.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+++++H+L+TPL+aI+g++ lL++++ ++l++e
CP000555_0 358 ELDAFARTAAHDLKTPLNAIIGFIGLLRARYA------PALGPEG-- 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++a+ +++LindlL ls+ +
CP000555_0 397 ----------DRMSALVESSARGMNHLINDLLALSQVATH 426

CP000555_2068: domain 1 of 1, from 149 to 214: score 60.0, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL++ e ++ +
CP000555_2 149 ATKELIRNLAHEIKNPLGGIRGAAQLLQM----------EVESKGL- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey ++i++ea+rl++L+++lL r +
CP000555_2 185 ----------SEYAQVIIHEADRLQALVDRLLAPHRRPHV 214

CP000555_1630: domain 1 of 1, from 222 to 288: score 59.4, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HEL TPLt+++ ++el+l+ +++ e++
CP000555_1 222 QLEGFNADVAHELCTPLTTLISATELALR---------KTRGVEEM- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l + l+e++rl ++ d+L ls ++ g
CP000555_1 259 ----------REVLGSNLEELRRLAGIVHDMLFLSHADRG 288

CP000555_2734: domain 1 of 1, from 140 to 208: score 57.8, E = 4.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f +++H+LR PL aI+gy+ lL + ++++ l++e
CP000555_2 140 GLEAFSYSVAHDLRAPLRAISGYSGLLAD------HHRSQLDAEG-- 178

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++i ++a+r+++Li+dl l+ ++g
CP000555_2 179 ----------QGFLDRIGKSARRMEALIDDLIKLAHVGHG 208

CP000555_1167: domain 1 of 1, from 453 to 521: score 52.8, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+++HE ++P+++I+g+++lL+e l +++++ ++
CP000555_1 453 TVGQLTASIAHEVNNPIAVIQGNLDLLRELL-------GPQTAAKV- 491

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ +++++er++ ++ +lL+++r +
CP000555_1 492 ----------DAELRLVDEQIERMRLIVTQLLQFARPNEY 521

CP000555_3159: domain 1 of 1, from 233 to 298: score 52.4, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+++H+LRTPLta+r+ +el+l ++ ++
CP000555_3 233 RQRHFIADAAHQLRTPLTALRTESELALL---------EAHPPAV-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+++r+++r r ++lL l+r ea
CP000555_3 269 ----------HATLERVHRSTQRVARAADQLLALARSEAS 298

CP000555_0274: domain 1 of 1, from 538 to 610: score 52.3, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae ++ +l+ ++l +++
CP000555_0 538 AWGEVARRLAHEIKNPLTPIQLSAERIQHRLE------AKLEVPDQ- 577

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++ti +++ + +L+n+++d++r+ a
CP000555_0 578 -------QMLAKSVSTIVTQVQAMKQLVNEFRDYARLPAA 610

CP000555_3208: domain 1 of 1, from 409 to 469: score 50.7, E = 4.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++ a+++HE+R+PL+aI+ + lL e ++ s++q
CP000555_3 409 AMGRVSAGIAHEIRNPLAAIMQANALLAE---------DASSAQQ-- 444

peLRledpeyreyletilreaerllrLindlLdls<-*
++++ + + aerl r+++d+++ +
CP000555_3 445 ----------VQLTRMVGENAERLKRIVDDVMEVA 469

CP000555_2634: domain 1 of 1, from 271 to 335: score 47.6, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +lan+sHELR PL+ +++++ +L + ++e r
CP000555_2 271 ANQSLLANASHELRSPLARLKMALAMLDT-----------TPAERR- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+r ++ l++L++++L sr++a
CP000555_2 306 ----------GALKDEIERNIRELDALVEEVLLASRLDAR 335

CP000555_3140: domain 1 of 1, from 228 to 293: score 47.4, E = 4.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+ +HELRTPL+a r+ a+ L ++++
CP000555_3 228 AERQFAAAGAHELRTPLAAARAQAQRLAQ---------EARDVGL-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + + r+++rl +L ++lL+++rie+g
CP000555_3 264 ----------TERADALVRQLDRLAALASRLLQIARIESG 293

CP000555_2747: domain 1 of 1, from 229 to 295: score 47.3, E = 4.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTPL+a+++ ++++ + + ++
CP000555_2 229 RERRFTADAAHELRTPLAALQAQWDAARL---------SVGAPAEA- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i r + rl+rL+ ++L ++r+++
CP000555_2 266 ----------DASQDKIGRGLARLSRLVTQMLAMARLDHV 295

CP000555_1573: domain 1 of 1, from 223 to 282: score 40.4, E = 3.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ ae+ + +ee
CP000555_1 223 DRAVMLAGISHDLRTPLARMRLEAEM------------SVVDEEA-- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++l+++i+ ++d++r ++
CP000555_1 256 -------------KRNMAADIDQLDAIIDKFMDYARPGEV 282

CP000555_0812: domain 2 of 2, from 749 to 819: score 38.6, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE ++PLta+ + +++l++l + +++++ ++
CP000555_0 749 TMGELAASIAHEVNQPLTAVVVNGHACLRWL-----STEPRNDLEV- 789

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i r+a+r ++ i +++ + +
CP000555_0 790 ----------QDAIQRIVRDANRASEVIARIRGFLKRSKT 819

CP000555_2530: domain 1 of 1, from 1 to 70: score 37.9, E = 2e-10
*->kseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlp
++e++a+++HE ++PL+a+ ++a+++ ++l ++++ ++
CP000555_2 1 MGELAASIAHEVNQPLAAVVANAQACTRWLA-----ANPRNDREA-- 40

eLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++i r+a+r ++ i +++ + r + +
CP000555_2 41 ---------RNAVDRIVRDANRASEVIARIRGFLRRDDP 70

CP000555_2123: domain 1 of 1, from 613 to 683: score 36.5, E = 4.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PLtaI y+ + ++ ++++ +++
CP000555_2 613 TMGEMASSVAHELNQPLTAITNYCNGMVSRV-----KSDAIEKDDL- 653

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le+ r+a+r ++i +++ + + ++
CP000555_2 654 ----------IAALEKTARQAHRAGQIIHRIRAFVKRSEP 683

CP000555_0208: domain 1 of 1, from 458 to 533: score 36.4, E = 5.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e+++ lsHEL++PL+aI ya l+ ++ +
CP000555_0 458 SVGEMASLLSHELNQPLAAIASYATGSLN---------LIDDAGE-- 493

peLR.l..edpeyreyletilreaerllrLindlLdlsrieag<-*
R+ ++ ++re+++ i ++aer r i+ + d+ r +++
CP000555_0 494 ---RpDppSLAMIREATQHIAEQAERAGRVIRSVHDFVRRREQ 533

CP000555_3729: domain 1 of 1, from 551 to 614: score 35.9, E = 7.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+ l+HE R+ L+++++ aelL+ + e s+
CP000555_3 551 ASERFVTFLAHEVRNSLHSVIAGAELLRSG--------REVSASV-- 587

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++a++ l+L+n+lLd r++ag
CP000555_3 588 -------------AGSLGDSARSTLNLLNNLLDRNRLDAG 614

CP000555_2789: domain 1 of 1, from 233 to 328: score 35.0, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldk..v.lagdtelsee
++++++a+++HEL++P++ ++g++++L +++d+ ++ l ++ ++
CP000555_2 233 SLGRLVAGVAHELNNPISFVLGNVHALSRYSDRlrTyLEAVHADEPP 279

qrlpeLR..l....edpeyreyletilreaerllrLindlLdlsrieag<
rl e R++l+ ++ ++e l+ a+r +++n l +s ++ +
CP000555_2 280 ARLAEMRskLriehLLNDLPSLIEGTLEGAQRTADIVNGLKRFSAMDPE 328

-*

CP000555_2 - -

CP000555_0914: domain 1 of 1, from 125 to 192: score 33.0, E = 4.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a++ HE+ +PLt++ +++L+ ++++++ +l
CP000555_0 125 ALGFMVAGVCHEITNPLTSLHSIVQILRS---------EKQPSPALL 162

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ i ++r+l++ ++l +sr + +
CP000555_0 163 DKG----------FDNIAVNVKRILDISRRLVKFSRVGDE 192

CP000555_2851: domain 1 of 1, from 213 to 273: score 31.4, E = 1.4e-08
*->lsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRledp
+sH+LR P+ ++ g++++ +e++ + l +
CP000555_2 213 VSHDLRAPIRVVEGFTKIVKEDY-------GRLLDRVG--------- 243

eyreyletilreaerllrLindlLdlsrieag<-*
+ l+++l +a r++ +i+ lL lsr++a
CP000555_2 244 --NDHLDRVLGAAARMNGMIDALLALSRLGAL 273


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 8 0|=
-13 28 2|*==
-12 144 87|======*=====
-11 313 452|========================= *
-10 601 839|=============================================== *
-9 725 867|======================================================== *
-8 714 649|=================================================*=====
-7 526 409|===============================*=========
-6 320 235|==================*======
-5 171 129|=========*====
-4 100 69|=====*==
-3 69 36|==*===
-2 25 19|=*
-1 15 10|*=
0 9 5|*
1 6 2|*
2 2 1|*
3 2 0|=
> 4 40 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 304.4686
P(chi-square) = 0

Total sequences searched: 3819

Whole sequence top hits:
tophits_s report:
Total hits: 33
Satisfying E cutoff: 33
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 34
Satisfying E cutoff: 34
Total memory: 34K


Acknowledgements:

This research is funded by:

Developed by: