Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

2 accessions found for Methylibium petroleiphilum PM1  

Data for CP000556  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000556.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000556_0070 CDS_63062-64645 80.6 2.6e-23 1
CP000556_0482 CDS_438999-440852 35.9 1.2e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000556_0070 1/1 1 67 [. 1 87 [] 80.6 2.6e-23
CP000556_0482 1/1 252 320 .. 1 87 [] 35.9 1.2e-10

Alignments of top-scoring domains:
CP000556_0070: domain 1 of 1, from 1 to 67: score 80.6, E = 2.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sHE+RTPL+++ g+aelL++ lse ++
CP000556_0 1 MKSRFLATMSHEIRTPLNGVVGAAELLQK---------NGLSEREK- 37

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ + ++++ l +Lind+Ld s+++ g
CP000556_0 38 ----------AQMVSLLTQSSRALMALINDILDWSKLDVG 67

CP000556_0482: domain 1 of 1, from 252 to 320: score 35.9, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a +sHE+RTPL +I ++a+lL + + + +
CP000556_0 252 TRDLFIAKVSHEFRTPLQTIVALADLLAL---------KTDDGKSK- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e ++++ r+a++l ++ ndl + r+
CP000556_0 289 --------GLQEPIQRLSRAADQLMHQANDLAAFVRANKA 320


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 2 0|=
-13 4 0|==
-12 33 14|====*======
-11 60 74|==================== *
-10 125 138|========================================== *
-9 113 143|====================================== *
-8 102 107|================================== *
-7 71 67|======================*=
-6 62 38|============*========
-5 25 21|======*==
-4 16 11|===*==
-3 4 6|=*
-2 4 3|*=
-1 3 1|*
0 3 0|=
> 1 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 51.2663
P(chi-square) = 2.332e-08

Total sequences searched: 630

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: