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1 accessions found for Methanoculleus marisnigri JR1  

Data for CP000562  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000562.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000562_1154 CDS_1141453-1143714 42.0 9e-12 1
CP000562_2115 CDS_2120025-2118160 41.2 1.5e-11 1
CP000562_2282 CDS_2278866-2277310 38.3 9.7e-11 1
CP000562_1136 CDS_1119615-1120751 30.1 2.2e-08 1
CP000562_1350 CDS_1348840-1347092 29.7 2.7e-08 1
CP000562_1343 CDS_1336959-1334293 29.1 4.1e-08 1
CP000562_0419 CDS_408199-407126 28.4 6.3e-08 1
CP000562_0269 CDS_248255-246363 28.3 6.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000562_1154 1/1 684 741 .. 1 87 [] 42.0 9e-12
CP000562_2115 1/1 396 461 .. 1 87 [] 41.2 1.5e-11
CP000562_2282 1/1 451 508 .. 1 87 [] 38.3 9.7e-11
CP000562_1136 1/1 291 347 .. 1 87 [] 30.1 2.2e-08
CP000562_1350 1/1 514 571 .. 1 87 [] 29.7 2.7e-08
CP000562_1343 1/1 819 876 .. 1 87 [] 29.1 4.1e-08
CP000562_0419 1/1 291 347 .. 1 87 [] 28.4 6.3e-08
CP000562_0269 1/1 561 618 .. 1 87 [] 28.3 6.9e-08

Alignments of top-scoring domains:
CP000562_1154: domain 1 of 1, from 684 to 741: score 42.0, E = 9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e +a l +R+PL +I+g++elL e
CP000562_1 684 RNIEQFAILGDHIRQPLQVILGMSELLDE------------------ 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+++++r+++ i d Ld +ie+
CP000562_1 713 ----------QKATGRIREQVHRINSYITD-LDRGWIESR 741

CP000562_2115: domain 1 of 1, from 396 to 461: score 41.2, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef++ l H+L+TPLt + ++ + + e++++
CP000562_2 396 QKDEFISQLGHDLKTPLTPLVALMPRIVA---------REQDPDL-- 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++le++ + + ++ +L++ L+l+r+ +
CP000562_2 432 ----------RRLLEIAGHNVTYMKDLVQKTLQLARMNSL 461

CP000562_2282: domain 1 of 1, from 451 to 508: score 38.3, E = 9.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e +a l+ +R+PL aI+g aelL +
CP000562_2 451 RNMEQFALLADHIRNPLQAIMGRAELLDD------------------ 479

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +e+i+++++r++ +i++ Ld + e+
CP000562_2 480 ----------TETTEKIRQQVQRINGIIDQ-LDERWGESR 508

CP000562_1136: domain 1 of 1, from 291 to 347: score 30.1, E = 2.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
e +a l +R+PL +I gyae++ +
CP000562_1 291 KNIEQFAILGDHIRNPLQVIVGYAEMIDD------------------ 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+il e++r++ + + Ld +ie+
CP000562_1 320 -----------PFAEKILAESRRIDGFVTE-LDRGWIESA 347

CP000562_1350: domain 1 of 1, from 514 to 571: score 29.7, E = 2.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e +a l+ +R PL +++g a+lL++
CP000562_1 514 RNIEQFAFLADRIRHPLQVVMGVADLLED------------------ 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+++++++r++ i++ Ld ++ e+
CP000562_1 543 ----------EVVAEKLREQVRRINTRISE-LDREWTESR 571

CP000562_1343: domain 1 of 1, from 819 to 876: score 29.1, E = 4.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e +a l+ +R PL +I+g+a+l+ e
CP000562_1 819 QNIEQFAVLADHIRLPLQVILGMADLADE------------------ 847

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +i++++er+++++ + Ld + e+
CP000562_1 848 ----------ETMSAKIREQVERINAIVKQ-LDEGWVESR 876

CP000562_0419: domain 1 of 1, from 291 to 347: score 28.4, E = 6.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e +a l +R+PL +++g+a+l+ + +
CP000562_0 291 RNIEQFAVLTDHIRNPLQVVQGMADLIDD-------------PRA-- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+i+++++++ +++++ Ld + e++
CP000562_0 323 --------------EKIREQVRQIKAILRQ-LDEGWVESE 347

CP000562_0269: domain 1 of 1, from 561 to 618: score 28.3, E = 6.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e +a l +R+PL +I+g+a+l +
CP000562_0 561 RNIEQFAVLGDHIRQPLQVILGMADLTDD------------------ 589

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+++++r+++ i++ Ld + e+
CP000562_0 590 ----------PKTSAVIHDQVRRINEYIRQ-LDRGWVESR 618


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 10 0|==
-13 40 1|*====
-12 147 56|======*============
-11 280 295|=================================== *
-10 467 547|==========================================================*
-9 465 565|==========================================================*
-8 391 423|================================================= *
-7 278 266|=================================*=
-6 156 153|===================*
-5 103 84|==========*==
-4 53 45|=====*=
-3 38 23|==*==
-2 15 12|=*
-1 12 6|*=
0 4 3|*
1 6 1|*
2 0 0|
3 1 0|=
4 2 0|=
5 3 0|=
6 3 0|=
7 0 0|
8 1 0|=
9 0 0|
10 1 0|=
> 11 13 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 195.2016
P(chi-square) = 7.353e-36

Total sequences searched: 2489

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: