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Classification of phyla is from NCBI page
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264 projects found  

5 accessions found for Shewanella baltica OS155  

Data for CP000563  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000563.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000563_3445 CDS_4110651-4105297 105.0 2.1e-29 1
CP000563_0529 CDS_602692-606408 97.9 2.2e-27 1
CP000563_3092 CDS_3686408-3689206 91.6 1.4e-25 1
CP000563_1911 CDS_2261154-2258380 88.5 1e-24 1
CP000563_1360 CDS_1583843-1585141 78.4 7.6e-22 1
CP000563_3158 CDS_3769125-3766063 77.2 1.6e-21 1
CP000563_4230 CDS_5038265-5039311 65.0 4.6e-18 1
CP000563_0263 CDS_302776-301730 59.3 1.9e-16 1
CP000563_2874 CDS_3444499-3443417 53.8 7.1e-15 1
CP000563_0257 CDS_296387-295011 52.2 2e-14 1
CP000563_1864 CDS_2195475-2196872 51.2 3.8e-14 1
CP000563_1808 CDS_2136981-2134813 51.0 4.3e-14 1
CP000563_0988 CDS_1148254-1146986 50.7 5.5e-14 1
CP000563_0739 CDS_845036-846328 46.7 7.4e-13 1
CP000563_1725 CDS_2040612-2044052 46.6 7.6e-13 1
CP000563_0082 CDS_95360-97513 46.6 7.8e-13 1
CP000563_0494 CDS_566766-568919 45.6 1.5e-12 1
CP000563_2090 CDS_2470548-2472506 45.0 2.2e-12 1
CP000563_2758 CDS_3303918-3305714 39.2 9.8e-11 1
CP000563_0584 CDS_672343-674277 31.7 1.3e-08 1
CP000563_0290 CDS_329115-330371 29.7 4.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000563_3445 1/1 1042 1107 .. 1 87 [] 105.0 2.1e-29
CP000563_0529 1/1 721 786 .. 1 87 [] 97.9 2.2e-27
CP000563_3092 1/1 297 362 .. 1 87 [] 91.6 1.4e-25
CP000563_1911 1/1 400 465 .. 1 87 [] 88.5 1e-24
CP000563_1360 1/1 205 271 .. 1 87 [] 78.4 7.6e-22
CP000563_3158 1/1 509 574 .. 1 87 [] 77.2 1.6e-21
CP000563_4230 1/1 127 195 .. 1 87 [] 65.0 4.6e-18
CP000563_0263 1/1 126 191 .. 1 87 [] 59.3 1.9e-16
CP000563_2874 1/1 136 202 .. 1 87 [] 53.8 7.1e-15
CP000563_0257 1/1 244 306 .. 1 87 [] 52.2 2e-14
CP000563_1864 1/1 250 316 .. 1 87 [] 51.2 3.8e-14
CP000563_1808 1/1 498 563 .. 1 87 [] 51.0 4.3e-14
CP000563_0988 1/1 200 269 .. 1 87 [] 50.7 5.5e-14
CP000563_0739 1/1 214 279 .. 1 87 [] 46.7 7.4e-13
CP000563_1725 1/1 786 852 .. 1 87 [] 46.6 7.6e-13
CP000563_0082 1/1 472 539 .. 1 87 [] 46.6 7.8e-13
CP000563_0494 1/1 494 562 .. 1 87 [] 45.6 1.5e-12
CP000563_2090 1/1 282 348 .. 1 87 [] 45.0 2.2e-12
CP000563_2758 1/1 376 444 .. 1 87 [] 39.2 9.8e-11
CP000563_0584 1/1 405 474 .. 1 87 [] 31.7 1.3e-08
CP000563_0290 1/1 208 272 .. 1 87 [] 29.7 4.7e-08

Alignments of top-scoring domains:
CP000563_3445: domain 1 of 1, from 1042 to 1107: score 105.0, E = 2.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+++l+l tel+ +q
CP000563_3 1042 AKGDFLANMSHEIRTPMNAIIGMSQLCLQ---------TELDKKQ-- 1077

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e+i+r++++ll++ind+Ld+s+ieag
CP000563_3 1078 ----------KNYVEKIERASQSLLSIINDILDFSKIEAG 1107

CP000563_0529: domain 1 of 1, from 721 to 786: score 97.9, E = 2.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
CP000563_0 721 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTAQQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++ +a++llr+ind+Ld+s+ieag
CP000563_0 757 ----------KDYLEKAGFSAQSLLRIINDILDFSKIEAG 786

CP000563_3092: domain 1 of 1, from 297 to 362: score 91.6, E = 1.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a L + t+l + q
CP000563_3 297 IKSEFLANMSHELRTPLNGVIGFARQLVK---------TPLHSSQ-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+r+a ll +ind+Ld+s++eag
CP000563_3 333 ----------VDYIKTIERSATNLLGIINDILDFSKLEAG 362

CP000563_1911: domain 1 of 1, from 400 to 465: score 88.5, E = 1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+e l n+sHE+RTPL++I g++elL++ t l+++q
CP000563_1 400 RKTEHLTNISHEIRTPLNGITGALELLRN---------TQLTPKQ-- 435

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +t++++a++ll++in+lLd+sriea
CP000563_1 436 ----------MDLRDTAYNCANSLLAIINNLLDFSRIEAD 465

CP000563_1360: domain 1 of 1, from 205 to 271: score 78.4, E = 7.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ + ++ +
CP000563_1 205 MRKEFVANVSHELKTPLTVLQGYLEMMQS---------MAEPDSMN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++++r+++++++lL lsrie
CP000563_1 242 ----------VKPLALMQQQTRRMQSMVEQLLMLSRIEDA 271

CP000563_3158: domain 1 of 1, from 509 to 574: score 77.2, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++++g++ lL +el++ q
CP000563_3 509 AKSQFLATMSHEIRTPLNGLLGTLTLLGH---------SELPPAQ-- 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ +nd+Ld+sr+e+g
CP000563_3 545 ----------QQMLALSQYSGTLLQTVLNDILDFSRLEQG 574

CP000563_4230: domain 1 of 1, from 127 to 195: score 65.0, E = 4.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L+e++ ++ls+ q+
CP000563_4 127 LRNSILLSVSHDLRTPLSTIIGTLTTLKEYM-------PKLSASQK- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++++ e++rl + i++lL+ +++++g
CP000563_4 166 ----------TELIDSAAAESHRLHQYIENLLQATKLQHG 195

CP000563_0263: domain 1 of 1, from 126 to 191: score 59.3, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el+++ +
CP000563_0 126 AAQFLVRNLAHEIKNPLGGLRGAAQLLSR----------ELDDPAL- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ i+++a+rl++L+++lL r +
CP000563_0 162 ----------KEFTTLIIEQADRLRNLVDRLLGPQRPTQH 191

CP000563_2874: domain 1 of 1, from 136 to 202: score 53.8, E = 7.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya+ L ++ls+ +
CP000563_2 136 ALGKMVATLAHQVRTPLSAALLYASNLAS---------PKLSDAAK- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ + ++ l+r++nd+L +++ ++
CP000563_2 173 ----------AKFQQKLVDRLNELERQVNDMLLMAKGRQD 202

CP000563_0257: domain 1 of 1, from 244 to 306: score 52.2, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPLt +++ + l+++ + +++e+
CP000563_0 244 NQQRLMGDISHELRTPLTRLQLSLALARK--------KGQQTAET-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+i eae+l++Li++lL+lsr
CP000563_0 281 --------------ERIGYEAEQLEKLISELLELSRVKLS 306

CP000563_1864: domain 1 of 1, from 250 to 316: score 51.2, E = 3.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f a+++HEL+TPL++I+++ + L+ +++q+
CP000563_1 250 RERRFSADAAHELKTPLSVIKLHQHGLES---------LIDDDPQQ- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i+ + ++++ +++lL l+r ++
CP000563_1 287 ----------KFHLAAIDAGVVHMSHTVEQLLVLARVDSI 316

CP000563_1808: domain 1 of 1, from 498 to 563: score 51.0, E = 4.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L ++l+ ++
CP000563_1 498 YLENMSSRLSHELRTPVAVVRSSLEHLNL---------QTLDKDT-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++++ + rl+ ++n++ + +r+e+
CP000563_1 534 ----------QKYVDRAQEGVSRLSMILNNMSEATRLEQS 563

CP000563_0988: domain 1 of 1, from 200 to 269: score 50.7, E = 5.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l+ ++ ++ s+eq++
CP000563_0 200 NQKHLSNAVSHEIRTPLARLKFALALMPMYC-------QPDSDEQKR 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ +++ +++L+++lL+++ +e++
CP000563_0 240 ----------QDFLDEMQLDIKEMEDLLQELLTYASLESQ 269

CP000563_0739: domain 1 of 1, from 214 to 279: score 46.7, E = 7.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++sH+L+TP++ +r+ +e+L+e ++se+ r
CP000563_0 214 DNKLLSRAVSHDLKTPIARLRFGIEALEE----------TQSEQLR- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++++ r+++ +++L+ lL ++r+++
CP000563_0 250 ----------VKYFQRLNRDLDTMEDLVMTLLSYARLDEA 279

CP000563_1725: domain 1 of 1, from 786 to 852: score 46.6, E = 7.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP000563_1 786 SKSRFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDREA-- 822

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
CP000563_1 823 ----------RTTLSHVNSSLKIAGELLTDLLDISKLDSG 852

CP000563_0082: domain 1 of 1, from 472 to 539: score 46.6, E = 7.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ elL+ el ++ e
CP000563_0 472 ALGELTAGIAHEINNPTAVILGNMELLRYEL-------GDNAEVV-- 509

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +++++ r++ +i+ lL++sr ++
CP000563_0 510 ----------KEEIDLVIQQVGRISTIIRSLLQYSRPGEF 539

CP000563_0494: domain 1 of 1, from 494 to 562: score 45.6, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I +++ L e+l ++ + e +
CP000563_0 494 ELDRFAYIASHDLKSPLRGIEQLTSWLAEDL-------SDNTNENV- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++ ++r+ L++ lL +sri+
CP000563_0 533 ----------QKYLGLIQSRIHRMVLLLDGLLMFSRIGRV 562

CP000563_2090: domain 1 of 1, from 282 to 348: score 45.0, E = 2.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak l+++ HE+RTP++aI+gy+ +L++ +ls +q
CP000563_2 282 AKLAVLSSINHEIRTPINAILGYSRMLKK----------ALSQPQ-- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++++++ +a+ l + ++ L +s++eag
CP000563_2 317 --------ELDKIVDKMAWSANLLYSVAENTLNYSKAEAG 348

CP000563_2758: domain 1 of 1, from 376 to 444: score 39.2, E = 9.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HEL++PL+a+r ya+ +++l ++ ++
CP000563_2 376 VIGSLSASINHELNQPLAALRSYAQNTQTFLA------RNMQDKA-- 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i++ ++rl +++ ++ ++r +g
CP000563_2 415 ----------LDNIKIIIELTDRLADIVGQFKSFTRKSQG 444

CP000563_0584: domain 1 of 1, from 405 to 474: score 31.7, E = 1.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ a+lsHEL++PL+aI y++ ++ +l ++++ +ee
CP000563_0 405 IAGELGASLSHELNQPLAAIGHYCHGAEVRL-----QRGTSPEEL-- 444

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i++e+ r +++i++l+ l + +
CP000563_0 445 ----------QSVLTLIQQEVTRADSIISRLRNLLKKRPV 474

CP000563_0290: domain 1 of 1, from 208 to 272: score 29.7, E = 4.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ Ir +e L ++e se
CP000563_0 208 AVRGATDNIAHDLRTPLSHIRIGLEELAS------KPSDEISEGC-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e++++l+ + +L l+rie+g
CP000563_0 247 --------------AILTEELDHCLATFDAMLSLTRIEEG 272


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 45 3|*===
-12 183 98|======*=======
-11 430 510|=============================== *
-10 696 947|================================================== *
-9 763 978|======================================================= *
-8 781 732|====================================================*===
-7 581 461|================================*=========
-6 334 265|==================*=====
-5 194 145|==========*===
-4 108 77|=====*==
-3 68 41|==*==
-2 33 21|=*=
-1 28 11|*=
0 17 5|*=
1 6 3|*
2 1 1|*
3 3 0|=
> 4 32 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 347.6861
P(chi-square) = 0

Total sequences searched: 4307

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: