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2 accessions found for Burkholderia pseudomallei 668  

Data for CP000571  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000571.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000571_0180 CDS_170318-167274 96.1 5.5e-27 1
CP000571_3144 CDS_2988547-2986232 75.9 3e-21 1
CP000571_0191 CDS_176756-174264 71.3 5.8e-20 1
CP000571_1513 CDS_1463474-1462080 67.8 5.9e-19 1
CP000571_2856 CDS_2725700-2727154 59.0 1.8e-16 1
CP000571_0950 CDS_932720-931341 57.8 4e-16 1
CP000571_0931 CDS_915956-917308 57.1 6.3e-16 1
CP000571_1031 CDS_1003286-1004791 55.8 1.4e-15 1
CP000571_1011 CDS_985165-983837 47.4 3.5e-13 1
CP000571_1923 CDS_1883201-1881030 46.5 6.1e-13 1
CP000571_2062 CDS_2012323-2010962 45.0 1.6e-12 1
CP000571_2300 CDS_2253922-2252753 37.4 2.4e-10 2
CP000571_0101 CDS_86864-88795 31.6 1.1e-08 1
CP000571_2561 CDS_2480670-2481449 28.9 5.9e-08 1
CP000571_2675 CDS_2577304-2576207 28.0 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000571_0180 1/1 532 597 .. 1 87 [] 96.1 5.5e-27
CP000571_3144 1/1 394 459 .. 1 87 [] 75.9 3e-21
CP000571_0191 1/1 336 401 .. 1 87 [] 71.3 5.8e-20
CP000571_1513 1/1 242 308 .. 1 87 [] 67.8 5.9e-19
CP000571_2856 1/1 242 308 .. 1 87 [] 59.0 1.8e-16
CP000571_0950 1/1 233 298 .. 1 87 [] 57.8 4e-16
CP000571_0931 1/1 235 300 .. 1 87 [] 57.1 6.3e-16
CP000571_1031 1/1 240 305 .. 1 87 [] 55.8 1.4e-15
CP000571_1011 1/1 207 272 .. 1 87 [] 47.4 3.5e-13
CP000571_1923 1/1 490 558 .. 1 87 [] 46.5 6.1e-13
CP000571_2062 1/1 230 295 .. 1 87 [] 45.0 1.6e-12
CP000571_0101 1/1 407 475 .. 1 87 [] 31.6 1.1e-08
CP000571_2561 1/1 27 94 .. 1 87 [] 28.9 5.9e-08
CP000571_2675 1/1 144 207 .. 1 87 [] 28.0 1.1e-07

Alignments of top-scoring domains:
CP000571_0180: domain 1 of 1, from 532 to 597: score 96.1, E = 5.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL+aI+g++elL++ ++lse+q
CP000571_0 532 AKSTFLATMSHEIRTPLNAIIGNLELLRR---------SPLSEQQ-- 567

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++++++++ ll++ind+Ldls+ e+g
CP000571_0 568 ----------SERLHVVESCSNALLHIINDILDLSKVESG 597

CP000571_3144: domain 1 of 1, from 394 to 459: score 75.9, E = 3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L++ + ++ q
CP000571_3 394 LKDELLATVSHELRTPLNVIYGWIEVLRN---------PVDGALQ-- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l+r++ d+Ld s + +g
CP000571_3 430 ----------QQAIDAIDRSARSLSRMVGDILDASSLATG 459

CP000571_0191: domain 1 of 1, from 336 to 401: score 71.3, E = 5.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+f+a +sHE+RTPL+aI +++lL + ++l++ +
CP000571_0 336 RKSRFIAVMSHEIRTPLNAIVSAIDLLSR---------AKLGPME-- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +t+ +++ +l +++d+Ld+s++ a
CP000571_0 372 ----------KQLADTAVKASASLVGMLDDVLDISKLHAK 401

CP000571_1513: domain 1 of 1, from 242 to 308: score 67.8, E = 5.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +nl+H++RTPLt +++ a+++l ++++++
CP000571_1 242 RLSQFSSNLAHDMRTPLTNLLAEAQVALS---------KPRTADE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ +e+ ++e +rl+r+i+d+L l+r ++
CP000571_1 278 ---------YRDVIESSIDEYQRLSRMIEDMLFLARSDNA 308

CP000571_2856: domain 1 of 1, from 242 to 308: score 59.0, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e ++l+H++RTPLt +++ a+++l + +s ++
CP000571_2 242 RLKEYSSDLAHDIRTPLTNLLAEAQVALS---------QRRSVDE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ +e+ +e +rl r+++d+L l+r++
CP000571_2 278 ---------YRQVIESSVEEYQRLARMVDDMLFLARADGH 308

CP000571_0950: domain 1 of 1, from 233 to 298: score 57.8, E = 4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++HELRTP+ +++ ++lL++ ++s+++r
CP000571_0 233 LQRHFIADAAHELRTPIMGLSIQTQLLQR----------TASADER- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ + rl++L ++lL+l+r+e +
CP000571_0 269 ----------ARILAQIQAGTTRLSHLAEQLLTLARLEPE 298

CP000571_0931: domain 1 of 1, from 235 to 300: score 57.1, E = 6.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPL+ +r+++e L+e + s+ +
CP000571_0 235 TQRDLTNGISHELRTPLARVRFALESLRE----------PGSAAE-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ ++++i++++ l++Li+ L+++r+e
CP000571_0 270 ---------YQNAIDSIEQDVSELDELIDMSLTYARLEYS 300

CP000571_1031: domain 1 of 1, from 240 to 305: score 55.8, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+L+TPL+a ++ +el+l+ ++ e +
CP000571_1 240 ARRRFFADAAHQLKTPLAAAQAGVELALR----------PAERERV- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++++ +++++lL lsr+e+
CP000571_1 276 ----------SVHLRRVNGAVRQAAKIVQQLLSLSRLESD 305

CP000571_1011: domain 1 of 1, from 207 to 272: score 47.4, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ ++sHEL+TPL+ + + + lL ++++e
CP000571_1 207 QQREMMHGISHELKTPLARLEFGLALLSS---------PDAPERM-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++r+++ l++L+ +lL++ r+e+g
CP000571_1 243 ----------RERQAALRRDVRELDELVTELLTIGRLEQG 272

CP000571_1923: domain 1 of 1, from 490 to 558: score 46.5, E = 6.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL a+ g ++lL++++ + l++
CP000571_1 490 DLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQ------GQLDARA-- 528

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ + + a r+++Li+dlL +sr +
CP000571_1 529 ----------DEFIGHAVDGATRMQSLIDDLLSYSRVGRL 558

CP000571_2062: domain 1 of 1, from 230 to 295: score 45.0, E = 1.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an +HELRTP++a ++ ++ L + e+++e +
CP000571_2 230 AERSFTANSAHELRTPIAAALAQTQRLIA----------EAPAEPL- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++++ +++ l+r ++l++l+++e g
CP000571_2 266 ----------RERARRVEGALHTLSRVSEQLMQLAKAEDG 295

CP000571_0101: domain 1 of 1, from 407 to 475: score 31.6, E = 1.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+aI+++++ + + + +s++
CP000571_0 407 ALGQMAAGITHELNQPLAAIMTLSSNAVRMAA------LGRSADL-- 445

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le + + a r+ +++ + ++r e+
CP000571_0 446 ----------TRNLELVNDLAGRMGKIVAHMKGFARHESV 475

CP000571_2561: domain 1 of 1, from 27 to 94: score 28.9, E = 5.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l+ +sH+LR PL+a+ a +L++ + ++s+e +
CP000571_2 27 VRDHALSVASHDLRSPLNAMHSWAYVLER--------RLAASDENL- 64

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i+ +e+ +L++ d r+e+
CP000571_2 65 ----------ARALDGIRIGIEQQTKLLETTIDAPRAETR 94

CP000571_2675: domain 1 of 1, from 144 to 207: score 28.0, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e l lsH++RTP t+I++++++ ++ ++ + +
CP000571_2 144 QRDEVLDFLSHDMRTPQTSILALLDVYRN---------EHGAMPPI- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ a+r l+L + + l+r++++
CP000571_2 181 -------------LERIETHARRALALADGFIHLTRAQSE 207


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 6 0|=
-14 20 0|==
-13 106 2|*=========
-12 247 74|======*================
-11 406 388|===================================*=
-10 570 721|==================================================== *
-9 593 744|====================================================== *
-8 495 557|============================================= *
-7 349 351|===============================*
-6 200 202|==================*
-5 138 110|=========*===
-4 62 59|=====*
-3 25 31|==*
-2 21 16|=*
-1 11 8|*
0 4 4|*
1 4 2|*
> 2 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 475.2921
P(chi-square) = 0

Total sequences searched: 3279

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: