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Classification of phyla is from NCBI page
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2 accessions found for Burkholderia pseudomallei 1106a  

Data for CP000573  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000573.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000573_0159 CDS_150413-147315 96.1 5.3e-27 1
CP000573_3016 CDS_2946985-2944670 75.9 2.9e-21 1
CP000573_1429 CDS_1399494-1398100 67.8 5.7e-19 1
CP000573_2704 CDS_2652381-2653835 59.0 1.7e-16 1
CP000573_0858 CDS_857724-856345 57.8 3.8e-16 1
CP000573_0838 CDS_840745-842163 57.1 6.1e-16 1
CP000573_0946 CDS_929177-930682 55.8 1.4e-15 1
CP000573_0926 CDS_911086-909758 47.4 3.4e-13 1
CP000573_1835 CDS_1817127-1814956 46.5 5.9e-13 1
CP000573_1967 CDS_1946802-1945441 45.0 1.6e-12 1
CP000573_2219 CDS_2216510-2215341 38.0 1.6e-10 2
CP000573_0082 CDS_69615-71546 31.6 1e-08 1
CP000573_2426 CDS_2407328-2408107 29.0 5.6e-08 1
CP000573_2531 CDS_2504434-2503337 28.0 1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000573_0159 1/1 550 615 .. 1 87 [] 96.1 5.3e-27
CP000573_3016 1/1 394 459 .. 1 87 [] 75.9 2.9e-21
CP000573_1429 1/1 242 308 .. 1 87 [] 67.8 5.7e-19
CP000573_2704 1/1 242 308 .. 1 87 [] 59.0 1.7e-16
CP000573_0858 1/1 233 298 .. 1 87 [] 57.8 3.8e-16
CP000573_0838 1/1 257 322 .. 1 87 [] 57.1 6.1e-16
CP000573_0946 1/1 240 305 .. 1 87 [] 55.8 1.4e-15
CP000573_0926 1/1 207 272 .. 1 87 [] 47.4 3.4e-13
CP000573_1835 1/1 490 558 .. 1 87 [] 46.5 5.9e-13
CP000573_1967 1/1 230 295 .. 1 87 [] 45.0 1.6e-12
CP000573_0082 1/1 407 475 .. 1 87 [] 31.6 1e-08
CP000573_2426 1/1 27 94 .. 1 87 [] 29.0 5.6e-08
CP000573_2531 1/1 144 207 .. 1 87 [] 28.0 1e-07

Alignments of top-scoring domains:
CP000573_0159: domain 1 of 1, from 550 to 615: score 96.1, E = 5.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL+aI+g++elL++ ++lse+q
CP000573_0 550 AKSTFLATMSHEIRTPLNAIIGNLELLRR---------SPLSEQQ-- 585

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++++++++ ll++ind+Ldls+ e+g
CP000573_0 586 ----------SERLHVVESCSNALLHIINDILDLSKVESG 615

CP000573_3016: domain 1 of 1, from 394 to 459: score 75.9, E = 2.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L++ + ++ q
CP000573_3 394 LKDELLATVSHELRTPLNVIYGWIEVLRN---------PVDGALQ-- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l+r++ d+Ld s + +g
CP000573_3 430 ----------QQAIDAIDRSARSLSRMVGDILDASSLATG 459

CP000573_1429: domain 1 of 1, from 242 to 308: score 67.8, E = 5.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +nl+H++RTPLt +++ a+++l ++++++
CP000573_1 242 RLSQFSSNLAHDMRTPLTNLLAEAQVALS---------KPRTADE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ +e+ ++e +rl+r+i+d+L l+r ++
CP000573_1 278 ---------YRDVIESSIDEYQRLSRMIEDMLFLARSDNA 308

CP000573_2704: domain 1 of 1, from 242 to 308: score 59.0, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e ++l+H++RTPLt +++ a+++l + +s ++
CP000573_2 242 RLKEYSSDLAHDIRTPLTNLLAEAQVALS---------QRRSVDE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ +e+ +e +rl r+++d+L l+r++
CP000573_2 278 ---------YRQVIESSVEEYQRLARMVDDMLFLARADGH 308

CP000573_0858: domain 1 of 1, from 233 to 298: score 57.8, E = 3.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++HELRTP+ +++ ++lL++ ++s+++r
CP000573_0 233 LQRHFIADAAHELRTPIMGLSIQTQLLQR----------TASADER- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ + rl++L ++lL+l+r+e +
CP000573_0 269 ----------ARILAQIQAGTTRLSHLAEQLLTLARLEPE 298

CP000573_0838: domain 1 of 1, from 257 to 322: score 57.1, E = 6.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPL+ +r+++e L+e + s+ +
CP000573_0 257 TQRDLTNGISHELRTPLARVRFALESLRE----------PGSAAE-- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ ++++i++++ l++Li+ L+++r+e
CP000573_0 292 ---------YQNAIDSIEQDVSELDELIDMSLTYARLEYS 322

CP000573_0946: domain 1 of 1, from 240 to 305: score 55.8, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+L+TPL+a ++ +el+l+ ++ e +
CP000573_0 240 ARRRFFADAAHQLKTPLAAAQAGVELALR----------PAERERV- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++++ +++++lL lsr+e+
CP000573_0 276 ----------SVHLRRVNGAVRQAAKIVQQLLSLSRLESD 305

CP000573_0926: domain 1 of 1, from 207 to 272: score 47.4, E = 3.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ ++sHEL+TPL+ + + + lL ++++e
CP000573_0 207 QQREMMHGISHELKTPLARLEFGLALLSS---------PDAPERM-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++r+++ l++L+ +lL++ r+e+g
CP000573_0 243 ----------RERQAALRRDVRELDELVTELLTIGRLEQG 272

CP000573_1835: domain 1 of 1, from 490 to 558: score 46.5, E = 5.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL a+ g ++lL++++ + l++
CP000573_1 490 DLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQ------GQLDARA-- 528

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ + + a r+++Li+dlL +sr +
CP000573_1 529 ----------DEFIGHAVDGATRMQSLIDDLLSYSRVGRL 558

CP000573_1967: domain 1 of 1, from 230 to 295: score 45.0, E = 1.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an +HELRTP++a ++ ++ L + e+++e +
CP000573_1 230 AERSFTANSAHELRTPIAAALAQTQRLIA----------EAPAEPL- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++++ +++ l+r ++l++l+++e g
CP000573_1 266 ----------RERARRVEGALHTLSRVSEQLMQLAKAEDG 295

CP000573_0082: domain 1 of 1, from 407 to 475: score 31.6, E = 1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+aI+++++ + + + +s++
CP000573_0 407 ALGQMAAGITHELNQPLAAIMTLSSNAVRMAA------LGRSADL-- 445

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le + + a r+ +++ + ++r e+
CP000573_0 446 ----------TRNLELVNDLAGRMGKIVAHMKGFARHESV 475

CP000573_2426: domain 1 of 1, from 27 to 94: score 29.0, E = 5.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l+ +sH+LR PL+a+ a +L++ + ++s+e +
CP000573_2 27 VRDHALSVASHDLRSPLNAMHSWAYVLER--------RLTASDENL- 64

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i+ +e+ +L++ d r+e+
CP000573_2 65 ----------ARALDGIRIGIEQQTKLLETTIDAPRAETR 94

CP000573_2531: domain 1 of 1, from 144 to 207: score 28.0, E = 1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e l lsH++RTP t+I++++++ ++ ++ + +
CP000573_2 144 QRDEVLDFLSHDMRTPQTSILALLDVYRN---------EHGAMPPI- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ a+r l+L + + l+r++++
CP000573_2 181 -------------LERIETHARRALALADGFIHLTRAQSE 207


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 6 0|=
-14 21 0|===
-13 105 2|*==========
-12 243 72|=======*=================
-11 397 375|=====================================*==
-10 536 695|====================================================== *
-9 553 718|======================================================== *
-8 472 537|================================================ *
-7 361 339|=================================*===
-6 198 195|===================*
-5 125 107|==========*==
-4 57 57|=====*
-3 29 30|==*
-2 21 15|=*=
-1 11 8|*=
0 4 4|*
1 4 2|*
> 2 21 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 494.1203
P(chi-square) = 0

Total sequences searched: 3164

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: