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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Rhodobacter sphaeroides ATCC 17029  

Data for CP000577  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000577.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000577_2911 CDS_3087853-3086072 96.4 2.3e-27 1
CP000577_1768 CDS_1878615-1877563 93.1 1.9e-26 1
CP000577_2278 CDS_2429232-2430857 82.1 2.5e-23 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000577_2911 1/1 376 460 .. 1 94 [] 96.4 2.3e-27
CP000577_1768 1/1 155 238 .. 1 94 [] 93.1 1.9e-26
CP000577_2278 1/1 350 435 .. 1 94 [] 82.1 2.5e-23

Alignments of top-scoring domains:
CP000577_2911: domain 1 of 1, from 376 to 460: score 96.4, E = 2.3e-27
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ+I+S+ ++Q r+++ +e+ + +++ q+RV+S
CP000577_2 376 EVHHRVKNNLQLIASIMNMQMRQARTPEA-----KGLMKGLQDRVMS 417

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
A+iH+ LY++ +l ++ +e l+ ++++ +++++ + +i +
CP000577_2 418 LATIHRGLYQTTGLTDIRADELLSDIVRQVVNLATGPGRRIA----V 460

CP000577_1768: domain 1 of 1, from 155 to 238: score 93.1, E = 1.9e-26
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRV N+L+++ SLLrLQa+ + +eev + aL E+q+R+ +
CP000577_1 155 EVHHRVANSLAMVQSLLRLQAQASGSEEV-----KTALAEAQGRIGA 196

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A +H+ LY + + +v+++ Yl+ ++++ + g +klD+
CP000577_1 197 VAAVHRSLYLGNEGRQVELGTYLRTMLADFTATLPPG-----VKLDV 238

CP000577_2278: domain 1 of 1, from 350 to 435: score 82.1, E = 2.5e-23
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ+ISSL+ LQ r +++++ +e + q+ + +
CP000577_2 350 EVHHRVKNNLQLISSLVALQRRGVQEPAM-----RERMARIQGQIGA 391

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A +++ L++ + +tvdf++++ L++ + + g+++ ++++l
CP000577_2 392 IAKTYDLLHQFGASETVDFGPFVPALCAAIEGAEGGRAR---IEAEL 435


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 2 0|=
-14 13 0|=
-13 54 18|=*==
-12 177 195|============*
-11 864 543|====================================*=====================
-10 658 703|============================================ *
-9 440 594|============================== *
-8 334 398|======================= *
-7 153 236|=========== *
-6 157 131|========*==
-5 43 71|=== *
-4 30 37|==*
-3 15 19|=*
-2 9 10|*
-1 10 5|*
0 3 2|*
1 3 1|*
2 2 0|=
3 1 0|=
> 4 5 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 363.4757
P(chi-square) = 0

Total sequences searched: 2973

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: