Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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3 accessions found for Rhodobacter sphaeroides ATCC 17029  

Data for CP000578  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000578.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000578_0943 CDS_1097088-1094989 75.7 1.1e-21 1
CP000578_0083 CDS_91666-93018 61.5 1.2e-17 1
CP000578_0961 CDS_1117929-1116535 53.1 2.6e-15 1
CP000578_0801 CDS_947957-946641 43.5 1.4e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000578_0943 1/1 465 533 .. 1 87 [] 75.7 1.1e-21
CP000578_0083 1/1 230 295 .. 1 87 [] 61.5 1.2e-17
CP000578_0961 1/1 245 311 .. 1 87 [] 53.1 2.6e-15
CP000578_0801 1/1 226 290 .. 1 87 [] 43.5 1.4e-12

Alignments of top-scoring domains:
CP000578_0943: domain 1 of 1, from 465 to 533: score 75.7, E = 1.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl+++sHELRTPLtaI+gyaelL++ +++ + + +r
CP000578_0 465 AKSSFLSSMSHELRTPLTAIIGYAELLEA-------SEGRKLDGER- 503

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i ++ l +L++ +L+lsr+e+
CP000578_0 504 ----------LQQVQAISTAGWTLVKLVDAVLELSRLEHR 533

CP000578_0083: domain 1 of 1, from 230 to 295: score 61.5, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a+++HEL+TPL+++++ ae++++ ++ +
CP000578_0 230 HEQDFTAYAAHELKTPLAGLKMQAEVARR---------APDAATR-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l i+r+++r +rL+ +lLd++ ++g
CP000578_0 266 ----------DHALAQIRRAVDRSDRLVHQLLDMAAVDQG 295

CP000578_0961: domain 1 of 1, from 245 to 311: score 53.1, E = 2.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ ++++H+LRTP+t +r+ +e L +++l+e+
CP000578_0 245 SLRQVSSDVAHDLRTPITRLRTSLEPLML--------REDLPEDA-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ +a+r+ r+ n +L +++ie g
CP000578_0 282 ----------AADIASAVGQADRIVRIFNAVLRIAQIEGG 311

CP000578_0801: domain 1 of 1, from 226 to 290: score 43.5, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an++HELRTP++a ++ a+ L e++e
CP000578_0 226 AERGFTANAAHELRTPMAAALAQAQRLIV----------EAPEAL-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r e++++e++rl rL lL+lsr+e
CP000578_0 261 ----------RPRAERLEQELKRLARLAAKLLELSRAEGA 290


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 1 0|=
-13 7 0|==
-12 25 24|=====*=
-11 74 124|=================== *
-10 179 231|============================================= *
-9 207 238|==================================================== *
-8 195 178|============================================*====
-7 126 112|===========================*====
-6 93 64|===============*========
-5 62 35|========*=======
-4 34 19|====*====
-3 21 10|==*===
-2 13 5|=*==
-1 4 2|*
0 3 1|*
1 1 0|=
2 0 0|
> 3 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 106.5077
P(chi-square) = 2.695e-18

Total sequences searched: 1052

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: