Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Rhodobacter sphaeroides ATCC 17029  

Data for CP000578  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000578.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000578_0458 CDS_533296-532220 58.4 5.1e-17 1
CP000578_0948 CDS_1102670-1104286 36.3 1e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000578_0458 1/1 151 233 .. 1 94 [] 58.4 5.1e-17
CP000578_0948 1/1 336 399 .. 1 73 [. 36.3 1e-10

Alignments of top-scoring domains:
CP000578_0458: domain 1 of 1, from 151 to 233: score 58.4, E = 5.1e-17
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HRV NN ++ SLLrLQ r+ d+++ ++a +s+ R
CP000578_0 151 ELQHRVSNNIATLGSLLRLQERRLGDPKA-----RAAVADSRARLEV 192

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A ++++L+ + vd+++Y++ L+++ ++ + sd+is +
CP000578_0 193 VARLQRRLHDP-SRQFVDMGDYIRGLAGDTVAAM-DASDRIS----C 233

CP000578_0948: domain 1 of 1, from 336 to 399: score 36.3, E = 1e-10
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E HRVKNNL+++ +L++ Q r + e E ++R+++
CP000578_0 336 ELSHRVKNNLALVLALIDRQIRTRGGIEP---------LELRGRIMA 373

mAliHEeLYksedldtvdfseYlekL<-*
+A +H +L ++ ++df+ +e+L
CP000578_0 374 IAEVHSMLFAAGERYDLDFGRLIERL 399


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 15 6|=*=
-12 46 69|========== *
-11 273 192|======================================*================
-10 237 248|================================================ *
-9 198 210|======================================== *
-8 133 141|=========================== *
-7 53 83|=========== *
-6 43 46|=========*
-5 23 25|====*
-4 12 13|==*
-3 5 6|=*
-2 2 3|*
-1 3 1|*
0 0 0|
1 1 0|=
2 0 0|
3 0 0|
4 1 0|=
5 0 0|
6 0 0|
> 7 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 66.4660
P(chi-square) = 2.123e-10

Total sequences searched: 1052

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: