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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

3 accessions found for Bifidobacterium longum DJO10A  

Data for CP000605  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000605.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000605_0006 CDS_4258-6165 78.6 3e-22 1
CP000605_0754 CDS_866055-867128 70.3 6.8e-20 1
CP000605_0043 CDS_52431-54128 65.4 1.6e-18 1
CP000605_1074 CDS_1263190-1261859 45.7 6.3e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000605_0006 1/1 319 388 .. 1 87 [] 78.6 3e-22
CP000605_0754 1/1 131 195 .. 1 87 [] 70.3 6.8e-20
CP000605_0043 1/1 289 356 .. 1 87 [] 65.4 1.6e-18
CP000605_1074 1/1 179 245 .. 1 87 [] 45.7 6.3e-13

Alignments of top-scoring domains:
CP000605_0006: domain 1 of 1, from 319 to 388: score 78.6, E = 3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTPL+aI gyael ++ ++d + e +
CP000605_0 319 KMKRFVSDASHELRTPLAAIHGYAELYKM------QRDMPGALERA- 358

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +e i+r+++r+ L++dlL l+r+++g
CP000605_0 359 ----------DESIEHIERSSQRMTVLVEDLLSLARLDEG 388

CP000605_0754: domain 1 of 1, from 131 to 195: score 70.3, E = 6.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++an+sHELRTP++a+++++e + +++ te ++
CP000605_0 131 MRRDMIANVSHELRTPVSALQAMVENMADGV-------TEPTPTN-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+il +++rl++Li lLdlsr+eag
CP000605_0 169 -------------LESILTQTQRLSDLIAFLLDLSRMEAG 195

CP000605_0043: domain 1 of 1, from 289 to 356: score 65.4, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTP+t++r++++lL++ + + ++ +
CP000605_0 289 FQKRFVSDVSHELRTPVTTMRMASDLLEM-------KKDGFDPST-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e + ++ r ++++ dlL++sr +ag
CP000605_0 327 ----------KRTVELLAGQISRFQDMLADLLEISRYDAG 356

CP000605_1074: domain 1 of 1, from 179 to 245: score 45.7, E = 6.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+sHEL+TP aI ++ae+ + ++ +++ +
CP000605_1 179 VRRDFVTNVSHELKTPAGAIALLAETVTD---------AADDPDAV- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +i +e+ rl +L+ l dl +++++
CP000605_1 216 ----------RYFSGRISKESARLTELVHHLIDLQKAQSP 245


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 18 0|===
-13 41 1|*=====
-12 87 45|======*======
-11 208 235|============================== *
-10 354 437|=================================================== *
-9 364 451|==================================================== *
-8 303 338|============================================ *
-7 262 213|==============================*=======
-6 151 122|=================*====
-5 88 67|=========*===
-4 51 36|=====*==
-3 23 19|==*=
-2 17 9|=*=
-1 9 5|*=
0 3 2|*
1 2 1|*
2 1 0|=
3 1 0|=
> 4 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 116.7070
P(chi-square) = 8.319e-20

Total sequences searched: 1990

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: