Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

3 accessions found for Bifidobacterium longum DJO10A  

Data for CP000605  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000605.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000605_0765 CDS_880264-878777 131.1 2e-37 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000605_0765 1/1 292 375 .. 1 94 [] 131.1 2e-37

Alignments of top-scoring domains:
CP000605_0765: domain 1 of 1, from 292 to 375: score 131.1, E = 2e-37
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ +S+LLrLQark+k+ ev ++ L+E+q+RV++
CP000605_0 292 EIHHRVKNNLQAVSALLRLQARKTKSDEV-----KKELQEAQRRVQT 333

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++HE L+++ d + vdf+ ++ +L++ ++++ ++++i+ +
CP000605_0 334 IAMVHEGLSQTAD-EVVDFDKVIANLLRMAVDLATMKDQHID----I 375


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 9 0|==
-14 15 0|==
-13 48 12|=*====
-12 124 130|================*
-11 466 363|=============================================*=============
-10 469 470|==========================================================*
-9 320 397|======================================== *
-8 228 266|============================= *
-7 123 158|================ *
-6 107 88|==========*===
-5 39 47|=====*
-4 14 25|== *
-3 16 13|=*
-2 2 6|*
-1 5 3|*
0 2 1|*
1 1 0|=
2 0 0|
3 0 0|
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 170.2406
P(chi-square) = 2.473e-31

Total sequences searched: 1990

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: