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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Shewanella loihica PV-4  

Data for CP000606  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000606.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000606_3193 CDS_3817317-3812011 101.1 2.5e-28 1
CP000606_1197 CDS_1393761-1390960 95.7 8.5e-27 1
CP000606_0458 CDS_512269-515961 95.6 9.2e-27 1
CP000606_0978 CDS_1127012-1130527 85.1 8.4e-24 1
CP000606_2741 CDS_3249728-3248436 81.0 1.2e-22 1
CP000606_0905 CDS_1030838-1028079 80.9 1.3e-22 1
CP000606_3781 CDS_4508695-4505567 80.3 1.9e-22 1
CP000606_2794 CDS_3320205-3317080 76.9 1.8e-21 1
CP000606_3252 CDS_3896461-3897849 64.3 6.5e-18 1
CP000606_3413 CDS_4075470-4076951 61.0 5.7e-17 1
CP000606_3553 CDS_4250924-4251979 60.2 9.9e-17 1
CP000606_3311 CDS_3957225-3958487 59.1 1.9e-16 1
CP000606_3674 CDS_4386163-4384022 54.4 4.2e-15 1
CP000606_1359 CDS_1572027-1573115 51.4 2.9e-14 1
CP000606_3564 CDS_4264799-4266166 51.2 3.4e-14 1
CP000606_1783 CDS_2050368-2048197 50.6 5.2e-14 1
CP000606_0079 CDS_94866-93574 50.1 7.2e-14 1
CP000606_3631 CDS_4338364-4339674 49.5 1.1e-13 1
CP000606_1528 CDS_1760224-1763646 47.9 2.9e-13 1
CP000606_0802 CDS_917301-916063 47.9 3e-13 1
CP000606_1082 CDS_1248034-1250070 47.6 3.5e-13 1
CP000606_0893 CDS_1016886-1015603 47.3 4.3e-13 1
CP000606_2200 CDS_2567553-2569835 46.9 5.5e-13 1
CP000606_3228 CDS_3862770-3861274 46.1 9.7e-13 1
CP000606_1437 CDS_1660512-1658689 38.5 1.4e-10 1
CP000606_0097 CDS_108959-110218 34.3 2.2e-09 1
CP000606_2606 CDS_3080597-3084097 34.0 2.5e-09 1
CP000606_1963 CDS_2277934-2276204 29.1 6.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000606_3193 1/1 1039 1104 .. 1 87 [] 101.1 2.5e-28
CP000606_1197 1/1 302 367 .. 1 87 [] 95.7 8.5e-27
CP000606_0458 1/1 721 786 .. 1 87 [] 95.6 9.2e-27
CP000606_0978 1/1 510 575 .. 1 87 [] 85.1 8.4e-24
CP000606_2741 1/1 205 271 .. 1 87 [] 81.0 1.2e-22
CP000606_0905 1/1 405 470 .. 1 87 [] 80.9 1.3e-22
CP000606_3781 1/1 407 472 .. 1 87 [] 80.3 1.9e-22
CP000606_2794 1/1 508 573 .. 1 87 [] 76.9 1.8e-21
CP000606_3252 1/1 244 310 .. 1 87 [] 64.3 6.5e-18
CP000606_3413 1/1 263 328 .. 1 87 [] 61.0 5.7e-17
CP000606_3553 1/1 129 194 .. 1 87 [] 60.2 9.9e-17
CP000606_3311 1/1 218 283 .. 1 87 [] 59.1 1.9e-16
CP000606_3674 1/1 467 534 .. 1 87 [] 54.4 4.2e-15
CP000606_1359 1/1 140 206 .. 1 87 [] 51.4 2.9e-14
CP000606_3564 1/1 240 302 .. 1 87 [] 51.2 3.4e-14
CP000606_1783 1/1 498 563 .. 1 87 [] 50.6 5.2e-14
CP000606_0079 1/1 213 278 .. 1 87 [] 50.1 7.2e-14
CP000606_3631 1/1 231 291 .. 1 87 [] 49.5 1.1e-13
CP000606_1528 1/1 780 846 .. 1 87 [] 47.9 2.9e-13
CP000606_0802 1/1 199 260 .. 1 87 [] 47.9 3e-13
CP000606_1082 1/1 300 365 .. 1 87 [] 47.6 3.5e-13
CP000606_0893 1/1 201 270 .. 1 87 [] 47.3 4.3e-13
CP000606_2200 1/1 525 590 .. 1 87 [] 46.9 5.5e-13
CP000606_3228 1/1 258 328 .. 1 87 [] 46.1 9.7e-13
CP000606_1437 1/1 388 456 .. 1 87 [] 38.5 1.4e-10
CP000606_0097 1/1 208 272 .. 1 87 [] 34.3 2.2e-09
CP000606_2606 1/1 784 850 .. 1 87 [] 34.0 2.5e-09
CP000606_1963 1/1 339 400 .. 1 81 [. 29.1 6.2e-08

Alignments of top-scoring domains:
CP000606_3193: domain 1 of 1, from 1039 to 1104: score 101.1, E = 2.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++aI+g+++l+l t l+ +q
CP000606_3 1039 AKSDFLANMSHEIRTPMNAIIGMSQLCLQ---------TSLDKKQ-- 1074

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e+i+r++++ll +ind+Ld+s+ieag
CP000606_3 1075 ----------QNYVEKIDRASKSLLGIINDILDFSKIEAG 1104

CP000606_1197: domain 1 of 1, from 302 to 367: score 95.7, E = 8.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a+ Ll+ t+l + q
CP000606_1 302 IKSEFLANMSHELRTPLNGVIGFAKQLLK---------TPLHASQ-- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ti+++a ll +ind+Ld+s++eag
CP000606_1 338 ----------QDYIKTIEKSATNLLGIINDILDFSKLEAG 367

CP000606_0458: domain 1 of 1, from 721 to 786: score 95.6, E = 9.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+ + t l+++q
CP000606_0 721 YKSEFLANMSHEIRTPMNAIIGMLQLASR---------TQLTPQQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ +a++llr+ind+Ld+s+ieag
CP000606_0 757 ----------ADYLDKAGFSAQSLLRIINDILDFSKIEAG 786

CP000606_0978: domain 1 of 1, from 510 to 575: score 85.1, E = 8.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks f++n+sHE+RTPL++I g++ l ++ + l+e q
CP000606_0 510 VKSSFISNISHEMRTPLNGIVGTLNLVRK---------DSLTERQ-- 545

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle ++ +++ l++Lind+Ldls+ieag
CP000606_0 546 ----------ARYLEMAEVSVNTLSALINDVLDLSKIEAG 575

CP000606_2741: domain 1 of 1, from 205 to 271: score 81.0, E = 1.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ + ++ +
CP000606_2 205 MRKEFVANVSHELKTPLTVLQGYLEMMQG---------MAEPDSPN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + ++++++r+++++++lL lsrie g
CP000606_2 242 ----------AKAMSQMQQQTNRMRSMVEQLLVLSRIEDG 271

CP000606_0905: domain 1 of 1, from 405 to 470: score 80.9, E = 1.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+++sHELRTP++a++g++elL +++s e+
CP000606_0 405 AKSEFLSMISHELRTPMNAVIGALELLSL---------ADKSGEE-- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++et+ +a+ l ++nd+Ld+ +ie+g
CP000606_0 441 ----------RDLIETASTSANNLIYILNDILDINKIESG 470

CP000606_3781: domain 1 of 1, from 407 to 472: score 80.3, E = 1.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHE+RTP+++++g + lL e t ls+ q
CP000606_3 407 TKEDFLACMSHEIRTPMNGVIGILGLLGE---------TQLSPMQ-- 442

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++ +a++ll+L+nd+Ld+s+ie+g
CP000606_3 443 ----------KRYVDVASASADSLLSLLNDILDFSKIESG 472

CP000606_2794: domain 1 of 1, from 508 to 573: score 76.9, E = 1.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++++g++ lL e +el+ q
CP000606_2 508 AKSLFLATMSHEIRTPLNGLLGTLTLLGE---------SELPTAQ-- 543

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ +nd+Ld+sr+e+g
CP000606_2 544 ----------KQMLALSQYSGALLQTVLNDILDFSRLEQG 573

CP000606_3252: domain 1 of 1, from 244 to 310: score 64.3, E = 6.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTPLta+ + e+Ll + +s e+
CP000606_3 244 RLSHFSADIAHELRTPLTALAMQNEVLLS---------QSRSTEE-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e++ + l+e+erl ++nd+L l++ ++g
CP000606_3 280 ---------YQELIYSNLEELERLTVMVNDMLWLAKSDNG 310

CP000606_3413: domain 1 of 1, from 263 to 328: score 61.0, E = 5.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efl +lsH+L+TPLt+++gy+++ l +++++ +
CP000606_3 263 AKQEFLLHLSHDLKTPLTTLLGYLDTWLL---------SPADARD-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ + +++ l++L+ ++L+l+ +e+g
CP000606_3 299 ----------DSLLQYAAASGQKLQQLLAQMLELAALENG 328

CP000606_3553: domain 1 of 1, from 129 to 194: score 60.2, E = 9.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el + ++
CP000606_3 129 AAQYLVRNLAHEIKNPLGGLRGAAQLLSR----------ELEDADQ- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++ i+++a+rl++L+++lL + +
CP000606_3 165 ----------REFTDLIIEQADRLRNLVDRLLGPQKPTEH 194

CP000606_3311: domain 1 of 1, from 218 to 283: score 59.1, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f +++sHELRTPLt I+g++ lL+ + ++e
CP000606_3 218 REQAFSRYASHELRTPLTIIQGASRLLEQ---------EGKPEFM-- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i ++a ++++i+ lL l + e g
CP000606_3 254 ----------QRQRGRIAKAASNMQHIIDALLSLVKQEKG 283

CP000606_3674: domain 1 of 1, from 467 to 534: score 54.4, E = 4.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ elL+ el +++ e+
CP000606_3 467 ALGELTAGIAHEINNPTAVILGNMELLKSEL-------GDKAEDV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++++++++ r++ +i+ lL++sr ++
CP000606_3 505 ----------EEEIDIVIEQVGRISTIIRSLLQYSRPGEF 534

CP000606_1359: domain 1 of 1, from 140 to 206: score 51.4, E = 2.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya L ++l+ r
CP000606_1 140 ALGKMVASLAHQVRTPLSAALLYAANLGS---------PKLTQVSR- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++ ++ l+++++d+L +++ +++
CP000606_1 177 ----------ERFQGKLIDRLNELSQQVDDMLLMAKGRQQ 206

CP000606_3564: domain 1 of 1, from 240 to 302: score 51.2, E = 3.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++sHELRTPLt +++++ l ++ + + +
CP000606_3 240 SQQRLISDISHELRTPLTRLQLALALTRK---------KGQASTE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i eae+l+++i +lL+lsr
CP000606_3 276 -------------IDRIGYEAEQLEAMIAELLELSRVKLD 302

CP000606_1783: domain 1 of 1, from 498 to 563: score 50.6, E = 5.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + l HELRTP++++r +e L ++l++++
CP000606_1 498 YLENMSSRLGHELRTPVAVVRSSLEHLNS---------QDLPPQH-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++++ + rl+ ++n++ + +r+e+
CP000606_1 534 ----------QKYVDRAHEGVSRLNMILNNMSEATRLEEA 563

CP000606_0079: domain 1 of 1, from 213 to 278: score 50.1, E = 7.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++HE RTP+ I+ ++++L + + +eq
CP000606_0 213 SHKNLTNAIAHESRTPIFRIQCNLDMLDD---------SGVRPEQ-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yle i+++++ l +i++lL ++++e +
CP000606_0 249 ----------MQYLEGIQEDLNELGGMIEELLHFAKLERP 278

CP000606_3631: domain 1 of 1, from 231 to 291: score 49.5, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e e+
CP000606_3 231 DRALLMAGISHDLRTPLTRIRLASEMMVE--------------ED-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e i +++e ++++in++ + r +++
CP000606_3 262 ----------EYLKEGIVHDIEDMDAIINQFIAYIRQDQE 291

CP000606_1528: domain 1 of 1, from 780 to 846: score 47.9, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP000606_1 780 SKSRFLAAVGHDLMQPLNAARLFTASLAQ--------YPNLDQEG-- 816

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
CP000606_1 817 ----------RTTLSHVNSSLKIAGELLTDLLDISKLDSG 846

CP000606_0802: domain 1 of 1, from 199 to 260: score 47.9, E = 3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e+ +++sHE RTPL+ +r++++l ++eld
CP000606_0 199 MHKELSRTISHEVRTPLARMRFALQLSKAELD--------------- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +++ +++ +++L n+ L ++++e+
CP000606_0 231 ----------EKYWQRLNADIDEIEQLANNYLSFAKLEHR 260

CP000606_1082: domain 1 of 1, from 300 to 365: score 47.6, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L +++g++el++ ++e
CP000606_1 300 AMGQLVGGVAHDFNNILGVLKGNLELMEL---------KGKDESI-- 335

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl t+l++ +r +L ++lL++sr e+
CP000606_1 336 ----------ARYLATALKACQRGTDLTRRLLQFSRQEQF 365

CP000606_0893: domain 1 of 1, from 201 to 270: score 47.3, E = 4.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l + ++ ++ qr
CP000606_0 201 NQKHLSNAVSHEIRTPLARLKFALALVPQYCA------PDSDPAQR- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ ++++++ ++ L+++lL+++ +e++
CP000606_0 241 ----------QAFLDEMQQDVKEMETLLQELLTYASLESQ 270

CP000606_2200: domain 1 of 1, from 525 to 590: score 46.9, E = 5.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ +++HE+R PL+ ++++ ++L+e + ++
CP000606_2 525 SQRELIQAVAHEFRSPLARVQLAFDMLEE---------QFEQDKP-- 560

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ti + + l++Li + Ld+ +ie+
CP000606_2 561 ----------TRLIDTINKGLSELEKLIKEALDFIQIESK 590

CP000606_3228: domain 1 of 1, from 258 to 328: score 46.1, E = 9.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e +++++HE+++PLtaI +ya+++l+ t++++e ++
CP000606_3 258 SMEEIASSIAHEINQPLTAIATYAQAALR---------TNKGDERVP 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+L +le+i ++a r + i+ ++++ +a
CP000606_3 296 EAL-------INALEKITEQALRAGEVIRTIRQFISKQAS 328

CP000606_1437: domain 1 of 1, from 388 to 456: score 38.5, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HE+++PL+aIr ya+ ++ l++++++++
CP000606_1 388 VIGSLSASINHEINQPLAAIRSYAQNTQT-----LLSRAKWDDVS-- 427

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ti++ ++rl ++++++ ++r +g
CP000606_1 428 -----------SNIMTIIELTDRLAAIVSQFKSFTRKSQG 456

CP000606_0097: domain 1 of 1, from 208 to 272: score 34.3, E = 2.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ +r +e L +++e++
CP000606_0 208 AVRGATDNIAHDLRTPLSHLRIGLEQLPQ-----------RPAEEL- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++++e++++l+ + +L l+rie+g
CP000606_0 243 ----------DEASAILIEELDHCLATFDAMLSLTRIEEG 272

CP000606_2606: domain 1 of 1, from 784 to 850: score 34.0, E = 2.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+ l + sH+L +PL+a r+++++ + + ls +q
CP000606_2 784 KKSQYLKACSHDLLQPLSAARLFSSAFVQG--------GQLSNKQ-- 820

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+++++ ++L+ dl + srie g
CP000606_2 821 ----------KQQIGYIDNALQVANELLLDLNEVSRIEGG 850

CP000606_1963: domain 1 of 1, from 339 to 400: score 29.1, E = 6.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++++++HEL++PL++Ir +a+ +l ++ e
CP000606_1 339 LTGEMASGIAHELNQPLAGIRYLAQGSIYRL-------LAQQTEL-- 376

peLRledpeyreyletilreaerllrLindlLdl<-*
+ +l++il++++r ++ i +++++
CP000606_1 377 ----------QHALSKILQQVDRAQNTIKRFRQF 400


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 7 0|=
-13 35 2|*==
-12 147 88|======*=====
-11 346 457|=========================== *
-10 644 848|================================================== *
-9 735 876|========================================================= *
-8 703 656|==================================================*====
-7 471 413|===============================*=====
-6 330 237|==================*=======
-5 186 130|=========*=====
-4 91 69|=====*=
-3 49 36|==*=
-2 37 19|=*=
-1 19 10|*=
0 11 5|*
1 4 2|*
2 2 1|*
3 2 0|=
4 1 0|=
5 0 0|
6 0 0|
7 2 0|=
8 0 0|
9 1 0|=
10 1 0|=
11 0 0|
12 1 0|=
> 13 34 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 249.3900
P(chi-square) = 0

Total sequences searched: 3859

Whole sequence top hits:
tophits_s report:
Total hits: 28
Satisfying E cutoff: 28
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 28
Satisfying E cutoff: 28
Total memory: 32K


Acknowledgements:

This research is funded by:

Developed by: