Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Chlorobium phaeovibrioides DSM 265  

Data for CP000607  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000607.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000607_0366 CDS_378938-381547 107.3 1.9e-30 1
CP000607_1129 CDS_1291835-1290042 93.6 1.5e-26 2
CP000607_1634 CDS_1842885-1844432 51.2 1.6e-14 1
CP000607_1016 CDS_1162204-1160627 44.5 1.2e-12 1
CP000607_0427 CDS_475755-473653 35.8 3.7e-10 1
CP000607_0939 CDS_1077244-1075124 31.6 5.5e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000607_0366 1/1 223 288 .. 1 87 [] 107.3 1.9e-30
CP000607_1129 2/2 363 430 .. 1 87 [] 92.7 2.7e-26
CP000607_1634 1/1 141 207 .. 1 87 [] 51.2 1.6e-14
CP000607_1016 1/1 148 214 .. 1 87 [] 44.5 1.2e-12
CP000607_0427 1/1 475 542 .. 1 87 [] 35.8 3.7e-10
CP000607_0939 1/1 336 402 .. 1 87 [] 31.6 5.5e-09

Alignments of top-scoring domains:
CP000607_0366: domain 1 of 1, from 223 to 288: score 107.3, E = 1.9e-30
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP+++++g+a+lLle t+l+ eq
CP000607_0 223 AKSQFLANMSHEIRTPMNGVIGMADLLLE---------TALDTEQ-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y +ti+r+a++ll++ind+Ld+s+iea+
CP000607_0 259 ----------RKYAQTIIRSARSLLKIINDILDFSKIEAN 288

CP000607_1129: domain 2 of 2, from 363 to 430: score 92.7, E = 2.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+Irgy+e+Ll+++ ++e++
CP000607_1 363 IRRDFVSSVSHELRTPLTSIRGYTETLLDGA--------MHDAEHT- 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++i++e+e+l +L+nd+Ldls+ie+g
CP000607_1 401 ----------EAFLRIIHQESEQLTALVNDVLDLSKIESG 430

CP000607_1634: domain 1 of 1, from 141 to 207: score 51.2, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H++++ Lt ++gyae+ l + + e+ +
CP000607_1 141 TIGTLAGGIAHDFNNILTPMLGYAEMGLS---------SLAEEDPL- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ i+++aer +L+ ++L++sr+++
CP000607_1 178 ----------HDYFNEIIHAAERAKNLVGQVLTFSRAQES 207

CP000607_1016: domain 1 of 1, from 148 to 214: score 44.5, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L++I+g+ae+L + + +e++r
CP000607_1 148 VVGKLAGGIAHDFNNMLAVILGHAEMLSD---------GMGPEDER- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le il +++rl++L ++lL ++r +
CP000607_1 185 ----------YGNLEAILGATQRLDNLTRQLLAFARSQVV 214

CP000607_0427: domain 1 of 1, from 475 to 542: score 35.8, E = 3.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+ ++sHE RTPL+ I+g++++L +++ ++ + ++
CP000607_0 475 RVRRFFQMVSHEYRTPLAIIQGNISILSRRS-------HPGDTKK-- 512

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++r+a rll+ ++ + sr+ +
CP000607_0 513 ----------PIIFNAMHRAAGRLLEVMEQAVERSRLLET 542

CP000607_0939: domain 1 of 1, from 336 to 402: score 31.6, E = 5.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ +++H++++ L++ +gy+e+Lle +e +
CP000607_0 336 LLGQLAGGIAHDFNNMLSVTLGYTEILLE----------SIPETHPF 372

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ le i+r++er +L ++lL ++r +
CP000607_0 373 FEG----------LEAIRRSTERSANLTSQLLSFARKQLR 402


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 2 0|=
-13 18 1|*==
-12 72 40|======*=====
-11 167 207|============================ *
-10 295 385|================================================== *
-9 349 398|==========================================================*
-8 310 298|=================================================*==
-7 213 187|===============================*====
-6 131 108|=================*====
-5 80 59|=========*====
-4 50 31|=====*===
-3 30 16|==*==
-2 14 8|=*=
-1 6 4|*
0 2 2|*
1 2 1|*
2 1 0|=
> 3 11 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 100.7266
P(chi-square) = 3.899e-17

Total sequences searched: 1753

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: