Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Francisella tularensis subsp. tularensis WY96-3418  

Data for CP000608  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000608.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000608_0045 CDS_67931-70612 60.6 3.2e-17 1
CP000608_0137 CDS_184006-182579 57.0 3.2e-16 1
CP000608_0303 CDS_378303-377332 27.2 9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000608_0045 1/1 664 732 .. 1 87 [] 60.6 3.2e-17
CP000608_0137 1/1 249 314 .. 1 87 [] 57.0 3.2e-16
CP000608_0303 1/1 109 170 .. 1 87 [] 27.2 9e-08

Alignments of top-scoring domains:
CP000608_0045: domain 1 of 1, from 664 to 732: score 60.6, E = 3.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l+++sH+L+TPL++I+g+++ ++ + + ++eq+
CP000608_0 664 LQKSMLSSVSHDLKTPLASIMGALSSIKSYK-------DSFNPEQQ- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ +l e++rl++ i+++ ++ + ++g
CP000608_0 703 ----------AEMLDLALTESKRLDSYIDNIIQMLKVDSG 732

CP000608_0137: domain 1 of 1, from 249 to 314: score 57.0, E = 3.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f +++HEL+TP++++++++e++l+ + +++
CP000608_0 249 REKRFSGDAAHELKTPIAGVKTLVEIALA----------SDDIDEI- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+i+++++r +++i++lL+lsri+ +
CP000608_0 285 ----------KQKLERIKSSTNRYSHIIDQLLTLSRIQPN 314

CP000608_0303: domain 1 of 1, from 109 to 170: score 27.2, E = 9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
n++H+L+TPLt ++ +e L+ t+ + +
CP000608_0 109 DIKSVSNNIAHDLKTPLTRLKNKLEDLEQ---------TNPNKDS-- 144

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l e ++ll++ n lL l +e+g
CP000608_0 145 --------------SDALAECNQLLDIFNSLLRLNLLEHG 170


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 11 0|==
-13 28 1|*====
-12 85 37|======*========
-11 201 193|================================*=
-10 287 359|================================================ *
-9 321 371|====================================================== *
-8 234 277|======================================= *
-7 176 175|=============================*
-6 142 100|================*=======
-5 71 55|=========*==
-4 28 29|====*
-3 14 15|==*
-2 6 8|=*
-1 10 4|*=
0 9 2|*=
1 6 1|*
2 1 0|=
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 111.5025
P(chi-square) = 2.655e-19

Total sequences searched: 1634

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: