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2 accessions found for Methanococcus maripaludis C5  

Data for CP000609  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000609.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000609_0462 CDS_423564-421720 87.8 7e-25 1
CP000609_0289 CDS_249412-251331 82.9 1.6e-23 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000609_0462 1/1 390 458 .. 1 87 [] 87.8 7e-25
CP000609_0289 1/1 412 480 .. 1 87 [] 82.9 1.6e-23

Alignments of top-scoring domains:
CP000609_0462: domain 1 of 1, from 390 to 458: score 87.8, E = 7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse+l+ +sHELRTPLt+Irgy++lL++e ++l+++q
CP000609_0 390 LKSELLSIVSHELRTPLTSIRGYVDLLKDETA------GKLNDKQ-- 428

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ +i + ++rl rLi+++Ldl + e++
CP000609_0 429 ----------HEFILIISENSDRLKRLIDNMLDLVKVENE 458

CP000609_0289: domain 1 of 1, from 412 to 480: score 82.9, E = 1.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse++a +sHELRTPLt+I+gy+el l++ ++ ++ q
CP000609_0 412 LKSELIAIVSHELRTPLTSIKGYVELVLDGTM------GAINDSQ-- 450

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+++++ + rl+rLi+ +Ldls+ie g
CP000609_0 451 ----------RKCLQVADDNIVRLRRLIESMLDLSKIERG 480


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 13 0|==
-13 38 1|*=====
-12 122 41|=====*============
-11 220 214|==============================*=
-10 395 398|========================================================*
-9 325 411|=============================================== *
-8 264 308|====================================== *
-7 182 194|========================== *
-6 102 111|===============*
-5 54 61|========*
-4 35 32|====*
-3 33 17|==*==
-2 13 9|=*
-1 8 4|*=
0 4 2|*
1 1 1|*
2 0 0|
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 199.8857
P(chi-square) = 1.705e-37

Total sequences searched: 1813

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: