Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Rhodospirillum centenum SW  

Data for CP000613  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000613.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000613_3153 CDS_3321547-3318896 98.8 1.2e-27 1
CP000613_0964 CDS_1054907-1052172 96.3 6e-27 1
CP000613_2531 CDS_2659005-2662178 93.5 3.6e-26 1
CP000613_2825 CDS_2971232-2972821 89.2 6.2e-25 1
CP000613_2938 CDS_3083104-3085560 87.3 2.1e-24 1
CP000613_2427 CDS_2555567-2557909 86.9 2.8e-24 1
CP000613_2652 CDS_2795252-2797717 85.4 7.3e-24 1
CP000613_2210 CDS_2332674-2330449 84.9 1e-23 1
CP000613_0615 CDS_675629-678265 81.7 8.3e-23 1
CP000613_1842 CDS_1948537-1949799 81.5 9.1e-23 1
CP000613_1423 CDS_1506545-1508320 81.2 1.1e-22 1
CP000613_3719 CDS_3954444-3957128 81.2 1.1e-22 1
CP000613_3330 CDS_3509675-3511807 81.1 1.2e-22 1
CP000613_2659 CDS_2799995-2802076 80.1 2.3e-22 1
CP000613_3190 CDS_3361825-3363339 79.9 2.7e-22 1
CP000613_2762 CDS_2909800-2912034 79.3 4e-22 1
CP000613_3238 CDS_3408846-3407410 78.2 7.9e-22 1
CP000613_2761 CDS_2907779-2909599 71.9 5e-20 1
CP000613_0416 CDS_462797-460044 66.0 2.2e-18 1
CP000613_2989 CDS_3130313-3129270 65.0 4.6e-18 1
CP000613_2782 CDS_2932514-2930454 64.0 8.2e-18 1
CP000613_0119 CDS_118078-120372 51.2 3.5e-14 1
CP000613_0975 CDS_1066513-1067826 51.0 4.2e-14 1
CP000613_3270 CDS_3446755-3449142 49.0 1.5e-13 1
CP000613_0669 CDS_736443-737912 48.3 2.4e-13 1
CP000613_0117 CDS_115270-116397 48.0 2.9e-13 1
CP000613_3662 CDS_3886721-3885663 47.9 3.1e-13 1
CP000613_3971 CDS_4276740-4279067 47.8 3.2e-13 1
CP000613_1138 CDS_1217285-1215774 46.9 6.1e-13 1
CP000613_0874 CDS_937379-939874 45.9 1.1e-12 1
CP000613_1846 CDS_1952649-1954070 45.2 1.8e-12 1
CP000613_3393 CDS_3577600-3575636 44.0 4e-12 1
CP000613_3277 CDS_3459637-3457700 40.9 2.9e-11 1
CP000613_0339 CDS_367826-366720 40.2 4.7e-11 1
CP000613_0259 CDS_262746-261478 39.3 8.2e-11 1
CP000613_2682 CDS_2826827-2829358 39.1 9.7e-11 1
CP000613_2485 CDS_2612280-2613593 30.8 2.2e-08 1
CP000613_2594 CDS_2733794-2735530 29.6 4.7e-08 1
CP000613_0458 CDS_503575-504942 28.1 1.3e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000613_3153 1/1 660 728 .. 1 87 [] 98.8 1.2e-27
CP000613_0964 1/1 672 739 .. 1 87 [] 96.3 6e-27
CP000613_2531 1/1 680 745 .. 1 87 [] 93.5 3.6e-26
CP000613_2825 1/1 280 348 .. 1 87 [] 89.2 6.2e-25
CP000613_2938 1/1 579 648 .. 1 87 [] 87.3 2.1e-24
CP000613_2427 1/1 481 550 .. 1 87 [] 86.9 2.8e-24
CP000613_2652 1/1 584 652 .. 1 87 [] 85.4 7.3e-24
CP000613_2210 1/1 237 302 .. 1 87 [] 84.9 1e-23
CP000613_0615 1/1 388 453 .. 1 87 [] 81.7 8.3e-23
CP000613_1842 1/1 180 249 .. 1 87 [] 81.5 9.1e-23
CP000613_1423 1/1 218 283 .. 1 87 [] 81.2 1.1e-22
CP000613_3719 1/1 661 730 .. 1 87 [] 81.2 1.1e-22
CP000613_3330 1/1 470 539 .. 1 87 [] 81.1 1.2e-22
CP000613_2659 1/1 436 505 .. 1 87 [] 80.1 2.3e-22
CP000613_3190 1/1 238 305 .. 1 87 [] 79.9 2.7e-22
CP000613_2762 1/1 499 568 .. 1 87 [] 79.3 4e-22
CP000613_3238 1/1 238 307 .. 1 87 [] 78.2 7.9e-22
CP000613_2761 1/1 372 437 .. 1 87 [] 71.9 5e-20
CP000613_0416 1/1 669 737 .. 1 87 [] 66.0 2.2e-18
CP000613_2989 1/1 108 176 .. 1 87 [] 65.0 4.6e-18
CP000613_2782 1/1 325 390 .. 1 87 [] 64.0 8.2e-18
CP000613_0119 1/1 512 583 .. 1 87 [] 51.2 3.5e-14
CP000613_0975 1/1 227 285 .. 1 87 [] 51.0 4.2e-14
CP000613_3270 1/1 438 503 .. 1 87 [] 49.0 1.5e-13
CP000613_0669 1/1 234 300 .. 1 87 [] 48.3 2.4e-13
CP000613_0117 1/1 141 205 .. 1 87 [] 48.0 2.9e-13
CP000613_3662 1/1 139 203 .. 1 87 [] 47.9 3.1e-13
CP000613_3971 1/1 401 467 .. 1 87 [] 47.8 3.2e-13
CP000613_1138 1/1 145 210 .. 1 87 [] 46.9 6.1e-13
CP000613_0874 1/1 457 523 .. 1 87 [] 45.9 1.1e-12
CP000613_1846 1/1 253 311 .. 1 87 [] 45.2 1.8e-12
CP000613_3393 1/1 287 352 .. 1 87 [] 44.0 4e-12
CP000613_3277 1/1 405 473 .. 1 87 [] 40.9 2.9e-11
CP000613_0339 1/1 137 202 .. 1 87 [] 40.2 4.7e-11
CP000613_0259 1/1 178 243 .. 1 87 [] 39.3 8.2e-11
CP000613_2682 1/1 478 541 .. 1 87 [] 39.1 9.7e-11
CP000613_2485 1/1 215 278 .. 1 87 [] 30.8 2.2e-08
CP000613_2594 1/1 336 407 .. 1 87 [] 29.6 4.7e-08
CP000613_0458 1/1 239 296 .. 1 87 [] 28.1 1.3e-07

Alignments of top-scoring domains:
CP000613_3153: domain 1 of 1, from 660 to 728: score 98.8, E = 1.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHELRTPL+aI+g+++l+ ++ ++l++
CP000613_3 660 AKSRFLANMSHELRTPLNAIIGFSDLMMSGMA------GTLPPRI-- 698

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i+ ++e+llr++nd+Ldlsrieag
CP000613_3 699 ----------QDYVQSIHASGEHLLRMVNDVLDLSRIEAG 728

CP000613_0964: domain 1 of 1, from 672 to 739: score 96.3, E = 6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl+++ HELRTPLt++r+++e+L + +el+eeqr
CP000613_0 672 MKDDFLSTVTHELRTPLTSVRALSEILYD--------TPELPEEQR- 709

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ti++e+erl rLin++Ld+++ieag
CP000613_0 710 ----------QKFLATIIKESERLTRLINQVLDMAKIEAG 739

CP000613_2531: domain 1 of 1, from 680 to 745: score 93.5, E = 3.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHELRTP+t+++g+++lLl t+ +++q
CP000613_2 680 AKSRFLAVMSHELRTPMTGVIGMIDLLLG---------TTVTSDQ-- 715

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ylet++++a+ ll +nd+Ld+s+ieag
CP000613_2 716 ----------RRYLETLHSSADALLVVLNDILDFSKIEAG 745

CP000613_2825: domain 1 of 1, from 280 to 348: score 89.2, E = 6.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl++ sHELRTPL+aI+g++e+L + +++++ls++q
CP000613_2 280 AKSEFLSGTSHELRTPLNAILGFTEALTA------GIYGPLSPKQ-- 318

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ +i++++ +ll+L+ndlLdl+r ea
CP000613_2 319 ----------AEAVTVIRDAGAHLLDLVNDLLDLARVEAR 348

CP000613_2938: domain 1 of 1, from 579 to 648: score 87.3, E = 2.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL+aI+g+ae+L+ el + s+ +
CP000613_2 579 TKSEFLANMSHELRTPLNAIIGFAEVLESELK------QQGSPIAK- 618

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + i ++++ll+Lind+Ld s++eag
CP000613_2 619 ----------AGYASDIAASGRHLLNLINDILDVSKMEAG 648

CP000613_2427: domain 1 of 1, from 481 to 550: score 86.9, E = 2.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+lsHELRTPL+aI+g++el ++ d ++ ++e+r
CP000613_2 481 AKNRFLAALSHELRTPLNAIIGFSELVATDTD------EHIDPEKR- 520

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey + +++ +ll+Li+dlLdl+riea+
CP000613_2 521 ----------REYAADVAQAGTHLLALISDLLDLARIEAN 550

CP000613_2652: domain 1 of 1, from 584 to 652: score 85.4, E = 7.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+an+s +LRTPL+aI+g+ae+L ++++ ++l++ q+
CP000613_2 584 LKSEFIANVSYQLRTPLNAIMGFAEILNNQYF------GPLNPRQI- 623

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey + +l++++rll+L+nd+Ldl+ ieag
CP000613_2 624 -----------EYARGVLEASRRLLALVNDILDLATIEAG 652

CP000613_2210: domain 1 of 1, from 237 to 302: score 84.9, E = 1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksef+a++sHE+RTP++aI+g +++L + t+l+e q
CP000613_2 237 AKSEFFATVSHEIRTPVNAILGSLDILGT---------TALDEHQ-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++++++ll+L++d+Ld++rieag
CP000613_2 273 ----------TRCISVMDSAGQSLLALLDDILDMTRIEAG 302

CP000613_0615: domain 1 of 1, from 388 to 453: score 81.7, E = 8.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+a +sHE RTPL+a++g+a+lLl t+l++eq
CP000613_0 388 AKSDFVAVMSHEVRTPLNALLGFADLLLQ---------TPLTAEQ-- 423

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + ++++e ll ++d+Ld+s++eag
CP000613_0 424 ----------REWVTLQREAGEALLTVVSDVLDFSKLEAG 453

CP000613_1842: domain 1 of 1, from 180 to 249: score 81.5, E = 9.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+ HELRTPL+aI+g+a+lL +e++ ++l+ ++
CP000613_1 180 RKSEFLANATHELRTPLNAILGFADLLVAEAY------GPLGNPH-- 218

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i+ +ae+ll+L++ +dl+++e+g
CP000613_1 219 ---------YAEYAHDIHTAAEHLLALVEGTMDLAKAESG 249

CP000613_1423: domain 1 of 1, from 218 to 283: score 81.2, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHELRTPL++++g ++l+++ +l+ +
CP000613_1 218 AKTEFLANMSHELRTPLNGMLGVVQLMRA---------RTLPQRD-- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++++ ll+++ndlLdls ie g
CP000613_1 254 ----------LHLVDVLHDAGRGLLAIVNDLLDLSNIEGG 283

CP000613_3719: domain 1 of 1, from 661 to 730: score 81.2, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+aI+g++e+++++ + ++ ++
CP000613_3 661 QQRKFIAAASHELRTPLNAIIGFSEMIQMQTF------GPVGDTR-- 699

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey il+++++ll+Lind+L+l r++ g
CP000613_3 700 ---------YQEYATDILNAGRHLLDLINDILTLGRMQPG 730

CP000613_3330: domain 1 of 1, from 470 to 539: score 81.1, E = 1.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s+fl+++ HELRTPL+aI+g++e+L++el + l+
CP000613_3 470 ARSRFLSAVGHELRTPLNAIIGFSEILRDEL------LGSLGNNR-- 508

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+y + i++ + +llrL ndl dl+rieag
CP000613_3 509 ---------YRDYAQDIHDGGLHLLRLTNDLVDLARIEAG 539

CP000613_2659: domain 1 of 1, from 436 to 505: score 80.1, E = 2.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHELRTPL+aI+g++e++ + ++ ++ + +
CP000613_2 436 AKGEFLANMSHELRTPLNAIIGFSEIIAA------QSLGPIGNPA-- 474

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i+++++ ll+ in++Ldls ie+g
CP000613_2 475 ---------YAEYASDIHDSGRVLLDVINEILDLSAIETG 505

CP000613_3190: domain 1 of 1, from 238 to 305: score 79.9, E = 2.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL++++g++e+L+ +++++ +++
CP000613_3 238 MRADFVANASHELRTPLATLLGFIETLRG---------PARDDAEAR 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +++++a r++rL+ndl+ lsrie
CP000613_3 276 ----------DRFLGIMHDQAGRMSRLVNDLMSLSRIELD 305

CP000613_2762: domain 1 of 1, from 499 to 568: score 79.3, E = 4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHELRTPL+aI+g++e+++++ + + s+
CP000613_2 499 AKTQFLATMSHELRTPLNAILGFSEIIRDGTF------GQVSPGI-- 537

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + ++a +ll++ind+Ldl++ e+
CP000613_2 538 ---------YQEYAGHVFDSASHLLDIINDVLDLAKVESA 568

CP000613_3238: domain 1 of 1, from 238 to 307: score 78.2, E = 7.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla++sHE+RTPL+aI+g++el ++ l+ +++ + +
CP000613_3 238 SKTEFLAMVSHEFRTPLNAIIGLSELGRT-----LPPSGAEGGRT-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++ i+++++ ll+L+ndlL ls+ e
CP000613_3 278 ----------REYFSLIHESGNTLLDLVNDLLNLSKVEVA 307

CP000613_2761: domain 1 of 1, from 372 to 437: score 71.9, E = 5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HE+++PLt++r ++e+ ++ ++e q+
CP000613_2 372 AIERFAADVAHEIKNPLTSMRSAVETVQR----------VKDETQL- 407

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l +i+++++rl+rLi+d+ sr++a+
CP000613_2 408 ----------RRLLAIIHHDVQRLDRLISDISNASRLDAE 437

CP000613_0416: domain 1 of 1, from 669 to 737: score 66.0, E = 2.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l++lsH+LRTPL +I+g a+ Ll+ l+ +el+++ r
CP000613_0 669 LRAALLSSLSHDLRTPLVSILGSASSLLT-LE------HELDDDAR- 707

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ +ti++eaer++r +++lLd++++++g
CP000613_0 708 ----------RELARTIQEEAERMNRFVQNLLDMTKLGSG 737

CP000613_2989: domain 1 of 1, from 108 to 176: score 65.0, E = 4.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+a++sHELRTPL+a++g+ael+++ + + ++++q+
CP000613_2 108 AKSQFMASISHELRTPLNAVIGFAELMETMA-------GQMTPDQI- 146

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y i ++ ll+L++d+ + ++ag
CP000613_2 147 ----------RDYAGEIGVGGRGLLALVQDITAVAEADAG 176

CP000613_2782: domain 1 of 1, from 325 to 390: score 64.0, E = 8.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+PL+aI++++ L++ ++
CP000613_2 325 AKSRFLAAASHDLRQPLNAISLLTCNLRT---------RVGDPGA-- 360

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ i+ +++ + +L + l+d+s++e+g
CP000613_2 361 ----------RELLDQIEGSLDAMIDLFESLMDISKLESG 390

CP000613_0119: domain 1 of 1, from 512 to 583: score 51.2, E = 3.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ +++ ++e+
CP000613_0 512 AWADVARRIAHEIKNPLTPIQLSAERLRRKY----LKEIQSDPET-- 552

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r +++ti r ++ + r+++++ ++r+ ++
CP000613_0 553 ---------FRTMTDTIVRHVDDIGRMVDEFSAFARMPSP 583

CP000613_0975: domain 1 of 1, from 227 to 285: score 51.0, E = 4.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTPLt +r+ ae + +
CP000613_0 227 DRTRMLAAISHDLRTPLTRMRLRAEFIDD------------------ 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++l++++ ++++i L ++r ea
CP000613_0 256 ----------DTVREKMLEDLQEMEAMIGATLAFAREEAS 285

CP000613_3270: domain 1 of 1, from 438 to 503: score 49.0, E = 1.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+P a+r++++lL ++ld+ +eq
CP000613_3 438 AKSQFLAAASHDLRQPFQAMRLLLHLLTDRLDR---------PEQ-- 473

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ +++ ++ + ++L++ lLd+s ++ag
CP000613_3 474 ----------RELAHKLSVALGSGEELLRALLDISILDAG 503

CP000613_0669: domain 1 of 1, from 234 to 300: score 48.3, E = 2.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e + n++H+LRTPL+ +r+ +el+ + ++ l+ +
CP000613_0 234 ELREVTDNVAHDLRTPLARLRARLELAAA--------EPGLPVGH-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ e++rll++ +L ++ eag
CP000613_0 271 ----------QALLDQTMAEIDRLLEIFGAILAIAAVEAG 300

CP000613_0117: domain 1 of 1, from 141 to 205: score 48.0, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+l+HE ++PL++Irg+a+lL+e + ee+
CP000613_0 141 SVIAMAAMLAHEVKNPLSGIRGAAQLLEESVV----------EED-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ +L++++ ++ +
CP000613_0 176 ----------RLLTRLICDETDRIVALVDRMEVFADRRPV 205

CP000613_3662: domain 1 of 1, from 139 to 203: score 47.9, E = 3.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + a+++HELRTP+t++rg ++ L + + +
CP000613_3 139 ERRFWNAAIAHELRTPVTVLRGRLQGLND---------GVFEPAP-- 174

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++l ++e l rLi+dl+ l e+g
CP000613_3 175 -----------ALFRSLLTQVEGLGRLIEDLRLLGLVENG 203

CP000613_3971: domain 1 of 1, from 401 to 467: score 47.8, E = 3.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H++++ Lt I+gya+lLl + + ++++
CP000613_3 401 TVGTLAGGIAHDFNNVLTPILGYADLLLS--------SLPEGSQD-- 437

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +e+i+r+a+r ++++ ++L +sr +++
CP000613_3 438 ----------HEDVEVIHRAARRARDIVAQMLAFSRPGSE 467

CP000613_1138: domain 1 of 1, from 145 to 210: score 46.9, E = 6.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks la++sH+LR+PL ++ +++ L + + l++++
CP000613_1 145 SKSHVLAAASHDLRQPLQSLFLLTGKLAA---------GSLGPPE-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ + r++ + L++ +Ld s+++ag
CP000613_1 181 ----------RETVDNLGRALAAMKVLLDAMLDVSKLDAG 210

CP000613_0874: domain 1 of 1, from 457 to 523: score 45.9, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lta++g+++lLl +++ +q
CP000613_0 457 AIGQLAGGVAHDFNNLLTAMIGFCDLLLL---------RHKPGDQS- 493

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r +L+++lL +sr ++
CP000613_0 494 ----------FSDIMQIKQNANRAANLVRQLLAFSRQQTL 523

CP000613_1846: domain 1 of 1, from 253 to 311: score 45.2, E = 1.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+la++sH+LRTPLt +++ + +L + ++
CP000613_1 253 QRTEMLAGVSHDLRTPLTRMKLELAMLPD-------------LPE-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ ++ +i+ L ++r e
CP000613_1 285 -------------VAELRQDVADMETMIEGYLAFARGEGA 311

CP000613_3393: domain 1 of 1, from 287 to 352: score 44.0, E = 4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+P a+r++++lL+ +l ++++ ++
CP000613_3 287 AKSRFLAAASHDLRQPFQAMRLFLHLLESRL-------EDATQIDL- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++++ + L+n lL+ls +ea
CP000613_3 326 -------------AHKLGESLDSGETLLNALLELSALEAA 352

CP000613_3277: domain 1 of 1, from 405 to 473: score 40.9, E = 2.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++ +sH+LR P +a++g+++ L + + + +s++ +
CP000613_3 405 EKTRFFSLISHDLRGPFNALLGMTQELAD-------HAGRMSPDAV- 443

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++a+ +++++lL+ sr +
CP000613_3 444 ----------ADFARCTHDSARKAFDMLENLLQWSRVQMS 473

CP000613_0339: domain 1 of 1, from 137 to 202: score 40.2, E = 4.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++HE+++ L + +++e L + +s +
CP000613_0 137 ALGRMMGGVAHEINNLLQPVTLLTEELMR---------RQRSTAD-- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+til++a + +r+i dlL +sr +
CP000613_0 173 ----------TACLHTILDCALSARRIIGDLLAFSRPGGR 202

CP000613_0259: domain 1 of 1, from 178 to 243: score 39.3, E = 8.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+fla++sH+LR+P+ a++ ++elL l ++
CP000613_0 178 ERSRFLAHASHDLRQPVQAVSIFTELLTQ----------RLAGTEH- 213

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++++ ++L+n lLd + +++g
CP000613_0 214 ----------EGTVDKLQQAVAATQNLLNALLDAAVLDSG 243

CP000613_2682: domain 1 of 1, from 478 to 541: score 39.1, E = 9.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ LtaI ++el+++ +++++ +r
CP000613_2 478 TVGQLTGGVAHDFNNLLTAIVNNLELARR---------DPAGAAER- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le +l++a+ +L+++lL ++r++
CP000613_2 515 -------------LEGALKAARAGTELVRRLLAFARMQPL 541

CP000613_2485: domain 1 of 1, from 215 to 278: score 30.8, E = 2.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++HEL PL +I a+ L + d +++++q
CP000613_2 215 AVGALAAAAAHELGSPLGTIAVVAKELAR--------DIPADSPQ-- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ +++++ r+++++ +l +r +
CP000613_2 252 ----------AEDLQLLQSQVARCRDILAEL---ARHPDE 278

CP000613_2594: domain 1 of 1, from 336 to 407: score 29.6, E = 4.7e-08
*->akseflanlsHELRTPLtaIrgya...elLleeldkvlagdtelsee
++ ++a+++HE +PL+aIr +a++ lLl+ +e +++
CP000613_2 336 TLGTMAAGVAHEVSQPLNAIRITAtdcALLLD---------EEGPPD 373

qrlpeLR.ledpeyreyletilreaerllrLindlLdlsrieag<-*
++LR+ l ti++++ r+ ++++++++ r +
CP000613_2 374 L--DYLRsG--------LATIRDQSARMGGIVDQMRQFGRRAPE 407

CP000613_0458: domain 1 of 1, from 239 to 296: score 28.1, E = 1.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +a+l+H L+TPL++I +++ e
CP000613_0 239 RARAEAADLAHALKTPLAVIANAVSGGGE------------------ 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ rea+r++r+i++ L +r+ a
CP000613_0 268 -----------DAAGVVAREADRMQRQIERHLARARAAAA 296


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 21 0|==
-13 63 3|*====
-12 174 91|======*=======
-11 315 474|========================= *
-10 628 880|================================================= *
-9 746 908|==========================================================*
-8 683 680|====================================================*
-7 494 428|================================*=====
-6 357 246|==================*=========
-5 196 135|==========*=====
-4 139 72|=====*=====
-3 75 38|==*===
-2 25 20|=*
-1 19 10|*=
0 11 5|*
1 6 2|*
2 2 1|*
> 3 47 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 425.7051
P(chi-square) = 0

Total sequences searched: 4041

Whole sequence top hits:
tophits_s report:
Total hits: 39
Satisfying E cutoff: 39
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 39
Satisfying E cutoff: 39
Total memory: 36K


Acknowledgements:

This research is funded by:

Developed by: