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Classification of phyla is from NCBI page
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76 projects found  

8 accessions found for Burkholderia vietnamiensis G4  

Data for CP000614  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000614.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000614_1241 CDS_1361919-1363238 91.8 9.1e-26 1
CP000614_2728 CDS_3058872-3060419 67.3 8.1e-19 1
CP000614_2201 CDS_2474161-2473019 61.1 4.7e-17 1
CP000614_2341 CDS_2631210-2628217 60.1 8.8e-17 2
CP000614_0079 CDS_93813-92329 59.2 1.6e-16 1
CP000614_2695 CDS_3025004-3023664 58.7 2.2e-16 1
CP000614_2459 CDS_2757679-2756363 51.0 3.4e-14 1
CP000614_0036 CDS_52761-51394 50.9 3.5e-14 1
CP000614_1317 CDS_1426024-1424741 43.7 4e-12 1
CP000614_2192 CDS_2459113-2461629 41.8 1.4e-11 1
CP000614_1841 CDS_2034352-2035713 39.7 5.3e-11 1
CP000614_3242 CDS_3619636-3617222 38.3 1.4e-10 1
CP000614_2935 CDS_3292019-3289995 34.2 1.9e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000614_1241 1/1 206 272 .. 1 87 [] 91.8 9.1e-26
CP000614_2728 1/1 281 346 .. 1 87 [] 67.3 8.1e-19
CP000614_2201 1/1 152 220 .. 1 87 [] 61.1 4.7e-17
CP000614_0079 1/1 240 305 .. 1 87 [] 59.2 1.6e-16
CP000614_2695 1/1 213 278 .. 1 87 [] 58.7 2.2e-16
CP000614_2459 1/1 220 278 .. 1 87 [] 51.0 3.4e-14
CP000614_0036 1/1 235 301 .. 1 87 [] 50.9 3.5e-14
CP000614_1317 1/1 207 272 .. 1 87 [] 43.7 4e-12
CP000614_2192 1/1 588 658 .. 1 87 [] 41.8 1.4e-11
CP000614_1841 1/1 234 293 .. 1 87 [] 39.7 5.3e-11
CP000614_3242 1/1 541 613 .. 1 87 [] 38.3 1.4e-10
CP000614_2935 1/1 419 481 .. 1 81 [. 34.2 1.9e-09
CP000614_2341 1/2 678 712 .. 1 44 [. 32.8 4.8e-09
CP000614_2341 2/2 771 802 .. 51 87 .] 27.3 1.7e-07

Alignments of top-scoring domains:
CP000614_1241: domain 1 of 1, from 206 to 272: score 91.8, E = 9.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+++e +l+e++r
CP000614_1 206 MRRDFVANVSHELKTPLTVLSGFLETMRE---------LPLNEDDR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ ++++a r+++++ dlL l+++e +
CP000614_1 243 ----------ARYLDLMEQQASRMRHIVTDLLVLAKLEGE 272

CP000614_2728: domain 1 of 1, from 281 to 346: score 67.3, E = 8.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ae +l+ ++ +++
CP000614_2 281 LQKRFIADAAHQMKTPLAGLRTQAEFALR---------HPVPPDV-- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i ++e+ rL+ +lL l+r+e+
CP000614_2 317 ----------QRSLEQIATSSEQAARLVTQLLALARAENR 346

CP000614_2201: domain 1 of 1, from 152 to 220: score 61.1, E = 4.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++nl+HE+++PL +Irg+a+lL+ el +e+ ++
CP000614_2 152 VNKQLIRNLAHEIKNPLGGIRGAAQLLEFEL-------GERERGEL- 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++e++rl+ L+++lL+ r +
CP000614_2 191 ----------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 220

CP000614_0079: domain 1 of 1, from 240 to 305: score 59.2, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLta++++ae + +++++q+
CP000614_0 240 AQRKFIADAAHQLRTPLTAVKLHAEQAAV----------ARDPQQT- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ +a+r rL n+lL l+r+e g
CP000614_0 276 ----------YTAVRELRAAADRAVRLSNQLLSLARAEPG 305

CP000614_2695: domain 1 of 1, from 213 to 278: score 58.7, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+a++ a+l + ++ ++
CP000614_2 213 TQKAFVADAAHELRTPLAAVQIQAQLVAR---------AKDDAAR-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ +++ + r rL ++lL l+r+e
CP000614_2 249 ----------REAVADLQDGVTRATRLTEQLLALARAEPD 278

CP000614_2459: domain 1 of 1, from 220 to 278: score 51.0, E = 3.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+++H+LRTPL+ +r+ ae++ +
CP000614_2 220 DRAVMLAGVAHDLRTPLARMRLRAEMMDD------------------ 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + r+++++++ ++++L ++ +a
CP000614_2 249 ----------ARLRDGVVRDVDSMSHVVDQFLVFAHGGAD 278

CP000614_0036: domain 1 of 1, from 235 to 301: score 50.9, E = 3.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+LRTP++++ + ++ +++ + ++ ++
CP000614_0 235 TQRRFIADAAHQLRTPIAVLDTQIQYARR---------RDHGDREL- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++r+++ + + + lL l+ +ea
CP000614_0 272 ----------AAVLDSMQRSSRKMADVTDKLLLLAHAEAT 301

CP000614_1317: domain 1 of 1, from 207 to 272: score 43.7, E = 4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ ++sHEL+TPL+ + + + lL + ++ s+
CP000614_1 207 QQREMMHAISHELKTPLARLEFGLALLAD---------ADDSSRM-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++r+++ l++L+ +lL++ r+e+g
CP000614_1 243 ----------QTRCDALRRDVRELDELVTELLTIGRLEQG 272

CP000614_2192: domain 1 of 1, from 588 to 658: score 41.8, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PL+aI y++ l+ l +++ ++e++
CP000614_2 588 TMGEMASSIAHELNQPLAAINNYCSGTLA-----LVKSGRSTPETL- 628

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le+ ++a r ++ +++++ + ++
CP000614_2 629 ----------QPALEKTAQQALRAGMIVKRIREFVKRSEP 658

CP000614_1841: domain 1 of 1, from 234 to 293: score 39.7, E = 5.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ +
CP000614_1 234 DRALMLAGISHDLRTPLARLRLETEMSPSD----------------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++e+++r+i + d++r +
CP000614_1 264 ----------QATKDAMVDDIEQMDRIIAAFIDYARPAQR 293

CP000614_3242: domain 1 of 1, from 541 to 613: score 38.3, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l +++ e++ +
CP000614_3 541 AWGEVARRLAHEIKNPLTPIQLSAERLQMKL-------SDKLEPHDA 580

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++ i +++ + r+++d+++++r
CP000614_3 581 DVL-------KRGATMIVNQVAAMKRMVDDFREYARTPPA 613

CP000614_2935: domain 1 of 1, from 419 to 481: score 34.2, E = 1.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r +++ + +++e+ ++
CP000614_2 419 ALGQMAAGITHELNQPLAALRSFSDNTRV--------LLDRGEQGAA 457

peLRledpeyreyletilreaerllrLindlLdl<-*
re le i +er+ ++ n+l +
CP000614_2 458 ----------RENLEAIAALTERMGKITNQLKLF 481

CP000614_2341: domain 1 of 2, from 678 to 712: score 32.8, E = 4.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelsee<-*
++ +l+++sH+LRTPLt+I g++++L + + + +e
CP000614_2 678 LRNSLLSAISHDLRTPLTTIVGFSSMLAN---------GRAAAE 712

CP000614_2341: domain 2 of 2, from 771 to 802: score 27.3, E = 1.7e-07
*->RledpeyreyletilreaerllrLindlLdlsrieag<-*
R+ re+++ i++ea r+ ++ +lLd++r++ag
CP000614_2 771 RE-----RELVDAIHDEALRMTGIVTNLLDMARLQAG 802


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 4 0|=
-13 22 2|*=
-12 116 74|======*===
-11 299 388|========================= *
-10 525 719|============================================ *
-9 661 743|======================================================== *
-8 598 556|==============================================*===
-7 424 350|=============================*======
-6 269 201|================*======
-5 151 110|=========*===
-4 87 59|====*===
-3 47 31|==*=
-2 33 16|=*=
-1 10 8|*
0 9 4|*
1 0 2|*
2 1 1|*
3 0 0|
4 2 0|=
> 5 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 198.1122
P(chi-square) = 1.833e-36

Total sequences searched: 3274

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: