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Classification of phyla is from NCBI page
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76 projects found  

8 accessions found for Burkholderia vietnamiensis G4  

Data for CP000615  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000615.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000615_0606 CDS_692348-695413 86.3 2.1e-24 1
CP000615_0608 CDS_696821-700210 79.6 1.7e-22 1
CP000615_1562 CDS_1783151-1785145 68.6 2.2e-19 1
CP000615_1500 CDS_1715978-1714536 67.0 6.3e-19 1
CP000615_1471 CDS_1681581-1682978 60.5 4.2e-17 1
CP000615_0005 CDS_7811-6681 56.6 5.4e-16 1
CP000615_2093 CDS_2406583-2407959 55.2 1.4e-15 1
CP000615_0047 CDS_50285-52096 53.7 3.7e-15 1
CP000615_0603 CDS_690275-688461 53.0 5.8e-15 1
CP000615_0634 CDS_727506-729386 46.7 3.6e-13 1
CP000615_1417 CDS_1614589-1615866 43.6 2.7e-12 1
CP000615_0906 CDS_1040202-1039375 38.8 6e-11 1
CP000615_0570 CDS_660729-659137 34.2 1.2e-09 1
CP000615_0257 CDS_308026-309912 29.1 3.5e-08 1
CP000615_0734 CDS_849578-848160 28.9 4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000615_0606 1/1 503 568 .. 1 87 [] 86.3 2.1e-24
CP000615_0608 1/1 524 589 .. 1 87 [] 79.6 1.7e-22
CP000615_1562 1/1 283 348 .. 1 87 [] 68.6 2.2e-19
CP000615_1500 1/1 234 301 .. 1 87 [] 67.0 6.3e-19
CP000615_1471 1/1 241 306 .. 1 87 [] 60.5 4.2e-17
CP000615_0005 1/1 161 226 .. 1 87 [] 56.6 5.4e-16
CP000615_2093 1/1 233 298 .. 1 87 [] 55.2 1.4e-15
CP000615_0047 1/1 232 297 .. 1 87 [] 53.7 3.7e-15
CP000615_0603 1/1 236 301 .. 1 87 [] 53.0 5.8e-15
CP000615_0634 1/1 400 470 .. 1 87 [] 46.7 3.6e-13
CP000615_1417 1/1 212 270 .. 1 87 [] 43.6 2.7e-12
CP000615_0906 1/1 44 111 .. 1 87 [] 38.8 6e-11
CP000615_0570 1/1 157 225 .. 1 87 [] 34.2 1.2e-09
CP000615_0257 1/1 398 466 .. 1 87 [] 29.1 3.5e-08
CP000615_0734 1/1 241 298 .. 1 79 [. 28.9 4e-08

Alignments of top-scoring domains:
CP000615_0606: domain 1 of 1, from 503 to 568: score 86.3, E = 2.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla+ sHE+RTPL++I+g++elL++ t+l++ q
CP000615_0 503 AKSSFLAATSHEIRTPLNVILGNLELLER---------TALDASQ-- 538

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++t++ +ae ll++++d+Ld+s+ieag
CP000615_0 539 ----------QSRVRTLRASAEGLLAIVSDILDFSKIEAG 568

CP000615_0608: domain 1 of 1, from 524 to 589: score 79.6, E = 1.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL+aI g++el+ + + l+ +
CP000615_0 524 AKSTFLATMSHEIRTPLNAIVGNLELMAR---------AQLPLAE-- 559

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+t+ ++++ ll+ ind+Ldls++e++
CP000615_0 560 ----------RRRLQTVMSSSDALLHTINDVLDLSKAESN 589

CP000615_1562: domain 1 of 1, from 283 to 348: score 68.6, E = 2.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+l+++sHELRTPL++I g +e+L+ + +
CP000615_1 283 LKDELLSTVSHELRTPLNVIYGWVEVLRS---------VDGQAFA-- 318

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l+r++ dlLd s + +g
CP000615_1 319 ----------QQAIDAIDRSARSLSRMVGDLLDASSLATG 348

CP000615_1500: domain 1 of 1, from 234 to 301: score 67.0, E = 6.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTP++ ++g ++++l+ + ++s + +
CP000615_1 234 RLEAFNADVAHELRTPISILIGQTQVALT--------SRDRSVDRM- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++ l+e erl+ +ind+L lsr + g
CP000615_1 272 ----------RQTLQSNLEEFERLRVIINDMLFLSRSDRG 301

CP000615_1471: domain 1 of 1, from 241 to 306: score 60.5, E = 4.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+L+TPL+a+++ +el+l+ ++ +
CP000615_1 241 ARRRFFADAAHQLKTPLAAVQAGVELALR---------PDEQPRA-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++++ +++++lL lsr+++
CP000615_1 277 ----------TAHLRRANGAVRQAAKIVQQLLSLSRLDSD 306

CP000615_0005: domain 1 of 1, from 161 to 226: score 56.6, E = 5.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELRTPL+ +r+++e+L+e + s+ +
CP000615_0 161 AQRDLTNGISHELRTPLARVRFALEMLRE----------PGSAAE-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +l++i +++ l++Li+ L+++r+e
CP000615_0 196 ---------YYGALDSIAQDVTELEELIDMSLTYARLEYS 226

CP000615_2093: domain 1 of 1, from 233 to 298: score 55.2, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++HELRTP+ +++ +elL++ + ++++r
CP000615_2 233 LQRHFIADAAHELRTPIMGLSIQSELLRR----------ASTADER- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ + rl +L ++lL+l+r+e
CP000615_2 269 ----------EQILAQIHAGTTRLGHLAEQLLTLARLEPD 298

CP000615_0047: domain 1 of 1, from 232 to 297: score 53.7, E = 3.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+P +a+++++ +L+ t+ ++e
CP000615_0 232 AKSRFLAAASHDLRQPSHALSLLVGALRG---------TKTDAER-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+r+++ l++L lLd sr++ag
CP000615_0 268 ----------AQILVQIERSTDALDSLFGALLDVSRLDAG 297

CP000615_0603: domain 1 of 1, from 236 to 301: score 53.0, E = 5.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL aI g +e+Ll+ ++s+
CP000615_0 236 AKNAFLGMVSHELRTPLQAICGSIEILLA---------RPQSDAN-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++a +l++L+ dl d+ ++++
CP000615_0 272 ----------LKTIRRLQNSASSLEALVKDLTDYIKLRST 301

CP000615_0634: domain 1 of 1, from 400 to 470: score 46.7, E = 3.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE +PL+aI + e+ l++l+ ++ ++ +
CP000615_0 400 MLGELAASIAHEVTQPLAAIVTSGEAGLRWLN------HDVPDLD-- 438

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+r+ +e + ++a+r ++i++++ +++
CP000615_0 439 --------EVRDSIEQMTDDARRATDIIRQIRAMAKRNDR 470

CP000615_1417: domain 1 of 1, from 212 to 270: score 43.6, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+++H+LRTPLt ++ a+lL + + +
CP000615_1 212 ERAVMLASIAHDLRTPLTRMQVRADLLTD-------------PGD-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ lr++e+++r i ++Ld++r +
CP000615_1 244 -------------RDGFLRDTESMSRVITQFLDFARESPE 270

CP000615_0906: domain 1 of 1, from 44 to 111: score 38.8, E = 6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sH+LR PL+a+ a +L+++l + +++
CP000615_0 44 LRDQALSTASHDLRSPLNAMHSWAYVLERQL-------AGADANV-- 81

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ +e+ +L++d+Ld r+++
CP000615_0 82 ----------QRALAGIRTGIEQQVALLDDVLDAPRAQTR 111

CP000615_0570: domain 1 of 1, from 157 to 225: score 34.2, E = 1.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+l+HELR+ L+ ++ ++ +L + + l++
CP000615_0 157 RLDVFIATLAHELRNQLAPLQHTIGILHS------LPAAGLGPAL-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++r++ +l rL++dlLd+ ri +
CP000615_0 196 ----------TQCKDIAERQIGQLVRLVDDLLDIGRIKTD 225

CP000615_0257: domain 1 of 1, from 398 to 466: score 29.1, E = 3.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+l HEL++PL aIr++++ ++++++ ++++
CP000615_0 398 VLGQMAAGLTHELNQPLVAIRTLCDNARTFFE------RGQPAPA-- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i + ++ + L +l +++r
CP000615_0 437 ----------LANLERIGKLVDGMAVLTGELKTFARKPDV 466

CP000615_0734: domain 1 of 1, from 241 to 298: score 28.9, E = 4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H++RTPL+ + + +elL ++ ++ +
CP000615_0 241 AMQRFIADAAHQMRTPLARLDAQIELLDG---------EHDPARH-- 276

peLRledpeyreyletilreaerllrLindlL<-*
+ l+ ++ rL +lL
CP000615_0 277 ----------AARLDALRATCADVGRLTGQLL 298


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 5 0|=
-13 15 1|*=
-12 81 47|=====*=====
-11 189 248|======================== *
-10 317 460|======================================== *
-9 416 475|==================================================== *
-8 399 356|============================================*=====
-7 266 224|===========================*======
-6 170 129|================*=====
-5 104 70|========*====
-4 47 37|====*=
-3 26 20|==*=
-2 14 10|=*
-1 12 5|*=
0 4 2|*
1 7 1|*
2 2 0|=
3 2 0|=
4 0 0|
> 5 20 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 143.3912
P(chi-square) = 3.323e-25

Total sequences searched: 2096

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: