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Classification of phyla is from NCBI page
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76 projects found  

8 accessions found for Burkholderia vietnamiensis G4  

Data for CP000616  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000616.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000616_0207 CDS_246576-249545 94.2 6.5e-27 1
CP000616_0244 CDS_292779-295079 75.7 1.2e-21 1
CP000616_0420 CDS_482033-479796 75.1 1.7e-21 1
CP000616_0904 CDS_991471-990011 73.0 6.7e-21 1
CP000616_0800 CDS_871290-869230 69.0 9.1e-20 1
CP000616_0176 CDS_200860-202353 63.0 4.5e-18 1
CP000616_1045 CDS_1158232-1160586 61.3 1.3e-17 1
CP000616_0789 CDS_860114-858744 55.9 4.5e-16 1
CP000616_0339 CDS_388195-387074 54.3 1.3e-15 1
CP000616_0228 CDS_275494-273905 50.1 2e-14 1
CP000616_0504 CDS_561885-563246 47.7 9.9e-14 1
CP000616_0985 CDS_1086204-1084432 42.8 2.3e-12 1
CP000616_0945 CDS_1042132-1040636 40.7 9.4e-12 1
CP000616_0208 CDS_249548-250708 38.4 4.3e-11 1
CP000616_0477 CDS_538212-539615 34.9 4e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000616_0207 1/1 539 605 .. 1 87 [] 94.2 6.5e-27
CP000616_0244 1/1 394 459 .. 1 87 [] 75.7 1.2e-21
CP000616_0420 1/1 366 430 .. 1 87 [] 75.1 1.7e-21
CP000616_0904 1/1 262 328 .. 1 87 [] 73.0 6.7e-21
CP000616_0800 1/1 457 522 .. 1 87 [] 69.0 9.1e-20
CP000616_0176 1/1 266 334 .. 1 87 [] 63.0 4.5e-18
CP000616_1045 1/1 446 510 .. 1 87 [] 61.3 1.3e-17
CP000616_0789 1/1 236 301 .. 1 87 [] 55.9 4.5e-16
CP000616_0339 1/1 151 216 .. 1 87 [] 54.3 1.3e-15
CP000616_0228 1/1 157 223 .. 1 87 [] 50.1 2e-14
CP000616_0504 1/1 249 307 .. 1 87 [] 47.7 9.9e-14
CP000616_0985 1/1 326 427 .. 1 87 [] 42.8 2.3e-12
CP000616_0945 1/1 275 339 .. 1 87 [] 40.7 9.4e-12
CP000616_0208 1/1 162 230 .. 1 87 [] 38.4 4.3e-11
CP000616_0477 1/1 221 316 .. 1 87 [] 34.9 4e-10

Alignments of top-scoring domains:
CP000616_0207: domain 1 of 1, from 539 to 605: score 94.2, E = 6.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHELRTPL++I+gya++L++ d+ l+ q
CP000616_0 539 AKDQFLANISHELRTPLNGILGYAQILQR--------DARLDTRQ-- 575

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i++++++ll Lind+Ld++r++ag
CP000616_0 576 ----------LASVGVIEQSGQHLLTLINDILDFARLGAG 605

CP000616_0244: domain 1 of 1, from 394 to 459: score 75.7, E = 1.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L+ + ++ q
CP000616_0 394 LKDELLATVSHELRTPLNVIYGWVEVLRS---------ASDDALQ-- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l r++ d+Ld s + +g
CP000616_0 430 ----------QQAIDAIDRSAHSLTRMVGDILDASSLATG 459

CP000616_0420: domain 1 of 1, from 366 to 430: score 75.1, E = 1.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla l HELR+PLt I++++el+++ +d+ +++ +
CP000616_0 366 AKDQFLAVLGHELRNPLTPISLALELIRN-------RDGQATPNE-- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+r+++++ rLi+dlLd sri g
CP000616_0 404 -------------IAIIQRQLDHMVRLIDDLLDVSRITRG 430

CP000616_0904: domain 1 of 1, from 262 to 328: score 73.0, E = 6.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f a+l+H+LRTPL+ +rg++e++l+ ++s+++
CP000616_0 262 HLSQFSADLAHDLRTPLNNMRGATEVALA---------RPRSADE-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +le+ l+e +rl r+i+++L l+r+e++
CP000616_0 298 ---------YQALLESNLEEYDRLARMIDNVLFLARAEHP 328

CP000616_0800: domain 1 of 1, from 457 to 522: score 69.0, E = 9.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HELRTP++a+++ a+++l+ + +++
CP000616_0 457 AERRFTADAAHELRTPIAAVSAQAQVALA---------ERHDAPR-- 492

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+ +l+ +r rL+++lL lsr++ag
CP000616_0 493 ----------RHALRGVLEGCDRAARLVDQLLLLSRLDAG 522

CP000616_0176: domain 1 of 1, from 266 to 334: score 63.0, E = 4.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ n+sH+LRTPLt++ gy+e+L ++ ++l + +r
CP000616_0 266 QRRELITNISHDLRTPLTSLHGYLETLSLKA-------DTLADAER- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++l ++ rL + l +l+r+e+g
CP000616_0 305 ----------RRYLSIALAQSTKVGRLAQALFELARLESG 334

CP000616_1045: domain 1 of 1, from 446 to 510: score 61.3, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k e l ++sH+LR PL++I gya+lLl ++++ q
CP000616_1 446 QKIETLGYVSHDLRAPLSTIHGYAKLLLQ----------TATPGQ-- 480

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+r++++ l Li++lL+++r+e +
CP000616_1 481 ----------ARLIRSIDRSIRYQLTLIDELLQYTRAELQ 510

CP000616_0789: domain 1 of 1, from 236 to 301: score 55.9, E = 4.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+++++HEL+TPL+aI+ a+++l+ + +e q
CP000616_0 236 RERAFTSDAAHELKTPLAAIKVQAQVALT---------ARDPERQ-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++ + ++r +L ++lL l+r+++
CP000616_0 272 ----------RRAMQRVVEGVDRSTHLADQLLALARLDET 301

CP000616_0339: domain 1 of 1, from 151 to 216: score 54.3, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +l +l H++RTPL +Ir++a+ L + +++e+
CP000616_0 151 ARNLLLGMLGHDMRTPLQTIRLTASYLSA---------LNAGEKV-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +++r++ r+++L++dl d+sr + g
CP000616_0 187 ----------SEAAARLIRSGGRMQSLLDDLCDFSRTQLG 216

CP000616_0228: domain 1 of 1, from 157 to 223: score 50.1, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f+a+l+HELR+ L+ +r + +L+ + +++ +
CP000616_0 157 RLSVFIAMLAHELRNHLAPLRHSVGVLQS---------LPEPAPAL- 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++r++ +l rL++dlLd ri ag
CP000616_0 194 ----------AQCRDAVHRQVGQLTRLVDDLLDVGRITAG 223

CP000616_0504: domain 1 of 1, from 249 to 307: score 47.7, E = 9.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ +++HELRTPL+ +++ + L +
CP000616_0 249 TLREFAGDAAHELRTPLAILMLGIGSLPD------------------ 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ r+a+r+ rL++++Ld++++ +
CP000616_0 278 ----------GETKTKLTRDAQRMKRLVDQMLDMAQASTV 307

CP000616_0985: domain 1 of 1, from 326 to 427: score 42.8, E = 2.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldk..v.lagdtelsee
+ ++++a+++HE+++P+ I++++ +L++++ ++ ++ + +++ +
CP000616_0 326 SIGQLAAGVAHEINNPIGFISANLNTLRTWV-RslLdVLAAHDALLP 371

qrlpeLR..l..........edp.eyreyletilreaerllrLindlLdl
q+ p++R+ l +++ + + +++e+ +++ ++ a r +r+++dl+d+
CP000616_0 372 QLEPAARdaLaaqrraadldYVRdEIVTLIDESIDGAVRVRRIVQDLRDF 421

srieag<-*
sr ++g
CP000616_0 422 SRPGSG 427

CP000616_0945: domain 1 of 1, from 275 to 339: score 40.7, E = 9.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a l+HE+R+P+ a+r+ ae +l+ ++ s +q
CP000616_0 275 MLGKLAAQLAHEIRNPMGAMRLKAENALA---------GDVSRQQ-- 310

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++il ++ r++++++ lL l++ ++
CP000616_0 311 -----------DALRIILAQIARIDAQLSGLLALTQPVSP 339

CP000616_0208: domain 1 of 1, from 162 to 230: score 38.4, E = 4.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++H+LRTPLt +r +e+Ll +l ++++e++
CP000616_0 162 GVRNVSNAIAHDLRTPLTELRSRLEVLLLGL-------RKKGDEDT- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le++ +++r + n lL l+ i+ag
CP000616_0 201 ----------LGQLEVAMTDVDRVIGIFNALLRLAEIDAG 230

CP000616_0477: domain 1 of 1, from 221 to 316: score 34.9, E = 4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldk......v.lagdte
a+++++a+++HEL++P++ ++g++++L++++++ ++ + +++ ++
CP000616_0 221 ALGRLVAGVAHELNNPISFVLGNVHVLKRYGERltrfidAtAQPLSA 267

lseeqrlpeLR.......ledpeyreyletilreaerllrLindlLdlsr
+ +++eLR ++ l +++ + + a+r ++++ l+ +s
CP000616_0 268 AERTRLRTELRidpilayL-----PSLVDGMVEGAQRTADIVSALRRFSA 312

ieag<-*
+ +
CP000616_0 313 VDRE 316


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 1 0|=
-13 18 0|=====
-12 49 25|======*======
-11 97 132|========================= *
-10 188 244|=============================================== *
-9 216 252|====================================================== *
-8 184 189|============================================== *
-7 155 119|=============================*=========
-6 84 68|================*====
-5 47 37|=========*==
-4 28 20|====*==
-3 13 10|==*=
-2 4 5|=*
-1 6 2|*=
> 0 24 -|======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 69.7800
P(chi-square) = 1.682e-11

Total sequences searched: 1114

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: