Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

8 accessions found for Burkholderia vietnamiensis G4  

Data for CP000618  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000618.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000618_0128 CDS_125251-121829 81.6 5.8e-24 1
CP000618_0190 CDS_194571-195923 61.6 2.7e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000618_0128 1/1 686 753 .. 1 87 [] 81.6 5.8e-24
CP000618_0190 1/1 230 295 .. 1 87 [] 61.6 2.7e-18

Alignments of top-scoring domains:
CP000618_0128: domain 1 of 1, from 686 to 753: score 81.6, E = 5.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ +++lsHELRTPL++I+gya+lLl +el++
CP000618_0 686 AKSRYVSGLSHELRTPLNSILGYAQLLLQ-------AKEELTPMR-- 723

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ti+r++e+ll+L++ lLd++rieag
CP000618_0 724 ----------YNAVRTIHRSGEHLLALVDGLLDIARIEAG 753

CP000618_0190: domain 1 of 1, from 230 to 295: score 61.6, E = 2.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+++HELR PLta+++ ae L e +e+s+
CP000618_0 230 SQRRFVADAAHELRSPLTAMSLQAERLAE---------AEMSSVA-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l ++++ +er ++L+++lL+l+++++
CP000618_0 266 ----------RERLTVLRQGIERGRSLLDQLLTLAKAQSA 295


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 3 0|===
-12 9 6|=====*===
-11 30 31|==============================*
-10 53 57|===================================================== *
-9 56 59|======================================================== *
-8 39 44|======================================= *
-7 21 28|===================== *
-6 18 16|===============*==
-5 12 8|=======*====
-4 15 4|===*===========
> -3 7 -|=======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 6.0062
P(chi-square) = 0.539

Total sequences searched: 263

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: