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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Vibrio cholerae O395  

Data for CP000626  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000626.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000626_0646 CDS_716333-713379 94.5 5.3e-27 1
CP000626_0670 CDS_741429-738856 91.9 2.9e-26 1
CP000626_0140 CDS_163516-164931 61.6 1.1e-17 1
CP000626_0464 CDS_521572-523065 56.2 3.9e-16 1
CP000626_0986 CDS_967362-965713 52.9 3.3e-15 1
CP000626_0641 CDS_708733-706364 44.3 9e-13 2
CP000626_0967 CDS_947668-949122 28.2 3.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000626_0646 1/1 469 534 .. 1 87 [] 94.5 5.3e-27
CP000626_0670 1/1 479 544 .. 1 87 [] 91.9 2.9e-26
CP000626_0140 1/1 254 319 .. 1 87 [] 61.6 1.1e-17
CP000626_0464 1/1 269 337 .. 1 87 [] 56.2 3.9e-16
CP000626_0986 1/1 312 379 .. 1 87 [] 52.9 3.3e-15
CP000626_0641 2/2 563 631 .. 1 87 [] 41.9 4.4e-12
CP000626_0967 1/1 279 333 .. 1 74 [. 28.2 3.2e-08

Alignments of top-scoring domains:
CP000626_0646: domain 1 of 1, from 469 to 534: score 94.5, E = 5.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+a lL++ t+l++ q
CP000626_0 469 AKSAFLATMSHEIRTPMNGVLGTARLLQD---------TTLTSTQ-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+++i r++++ll+++nd+Ld+s+ieag
CP000626_0 505 ----------QHYVQVINRSGRSLLAILNDVLDYSKIEAG 534

CP000626_0670: domain 1 of 1, from 479 to 544: score 91.9, E = 2.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ efla +sHELRTPL++++g ++lL++ t+l++eq
CP000626_0 479 VRAEFLAKMSHELRTPLNGVLGVSQLLKR---------TPLNDEQ-- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + ++ +++e+ll+ +nd+Ld+sr+e+g
CP000626_0 515 ----------REHVAVLCSSGEHLLAVLNDILDFSRLEQG 544

CP000626_0140: domain 1 of 1, from 254 to 319: score 61.6, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++++HEL+TPLt++r +ae +l+ + eq+
CP000626_0 254 REKRFTRMAAHELKTPLTVLRVNAENALR----------STNQEQL- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+i + +er +rLi +lL l++ e+
CP000626_0 290 ----------KQDLERIFKGIERTDRLIHQLLMLAKVEST 319

CP000626_0464: domain 1 of 1, from 269 to 337: score 56.2, E = 3.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+L+TPL aI+g a +L + + +ls e++
CP000626_0 269 TRTTLLASVSHDLKTPLGAIIGSATTLTD-------PSLHLSTETQ- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l +i +++erl+r + lLd++r a
CP000626_0 308 ----------QELLTSIAEQGERLNRSLTKLLDITRYTAT 337

CP000626_0986: domain 1 of 1, from 312 to 379: score 52.9, E = 3.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHELR P taI+g a++ l+ + ++++
CP000626_0 312 QQKEFFANVSHELRSPATAILGEAQITLR---------SRHNSDD-- 347

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyr+ l +i ++ae+l i+dlL l r ++
CP000626_0 348 --------EYRQTLLRISESAEQLAFRIEDLLMLIRHDER 379

CP000626_0641: domain 2 of 2, from 563 to 631: score 41.9, E = 4.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HEL++PL+a+++y+ ++ l +e++ q+
CP000626_0 563 VVGQTMTSLAHELNQPLSAMSAYLFSARLAL-------EEAPQAQL- 601

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i++ +er+ +++n l+ ++r +
CP000626_0 602 ----------ATSLDHIENLTERMGKIVNSLRHFARKNSS 631

CP000626_0967: domain 1 of 1, from 279 to 333: score 28.2, E = 3.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l l HELRTP+t++ +++e L+ ++ +els++
CP000626_0 279 ERRFILQLLTHELRTPITSLGFTVESLRSQF-------DELSPKA-- 316

peLRledpeyreyletilreaerllrL<-*
+e l ++ + +rl +L
CP000626_0 317 ----------QESLWRLMADHQRLAQL 333


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 1 0|=
-14 13 0|====
-13 35 0|=========
-12 86 25|======*===============
-11 129 134|=================================*
-10 181 249|============================================== *
-9 194 257|================================================= *
-8 149 192|====================================== *
-7 134 121|==============================*===
-6 66 69|=================*
-5 61 38|=========*======
-4 27 20|====*==
-3 17 10|==*==
-2 13 5|=*==
-1 8 2|*=
0 4 1|*
1 0 0|
2 0 0|
3 1 0|=
4 0 0|
5 0 0|
6 1 0|=
> 7 13 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 213.7165
P(chi-square) = 4.175e-310

Total sequences searched: 1133

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: