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Classification of phyla is from NCBI page
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5 accessions found for Agrobacterium radiobacter K84  

Data for CP000628  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000628.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000628_1126 CDS_1199159-1196844 100.6 3.3e-28 1
CP000628_2521 CDS_2663760-2660482 99.1 8.9e-28 1
CP000628_2055 CDS_2166902-2168431 94.5 1.8e-26 1
CP000628_1104 CDS_1172215-1173747 88.3 1e-24 1
CP000628_0479 CDS_520382-522685 81.5 8.8e-23 1
CP000628_0581 CDS_628224-629486 78.7 5.2e-22 1
CP000628_2625 CDS_2778615-2782004 78.5 6.2e-22 1
CP000628_0732 CDS_795846-792274 73.1 2e-20 1
CP000628_0036 CDS_40275-38431 68.8 3.5e-19 1
CP000628_0031 CDS_35225-32751 64.2 6.8e-18 1
CP000628_3428 CDS_3620434-3621792 59.3 1.7e-16 1
CP000628_3388 CDS_3579539-3580828 57.6 5.2e-16 1
CP000628_1695 CDS_1786579-1787736 53.3 8.5e-15 1
CP000628_3034 CDS_3203694-3205034 52.1 1.9e-14 1
CP000628_0058 CDS_63003-61666 42.8 7.8e-12 1
CP000628_1124 CDS_1192328-1193743 41.9 1.4e-11 1
CP000628_1697 CDS_1789468-1791741 41.0 2.6e-11 1
CP000628_3408 CDS_3600176-3598797 30.3 2.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000628_1126 1/1 545 614 .. 1 87 [] 100.6 3.3e-28
CP000628_2521 1/1 548 613 .. 1 87 [] 99.1 8.9e-28
CP000628_2055 1/1 259 328 .. 1 87 [] 94.5 1.8e-26
CP000628_1104 1/1 238 307 .. 1 87 [] 88.3 1e-24
CP000628_0479 1/1 254 319 .. 1 87 [] 81.5 8.8e-23
CP000628_0581 1/1 198 265 .. 1 87 [] 78.7 5.2e-22
CP000628_2625 1/1 676 742 .. 1 87 [] 78.5 6.2e-22
CP000628_0732 1/1 958 1027 .. 1 87 [] 73.1 2e-20
CP000628_0036 1/1 376 441 .. 1 87 [] 68.8 3.5e-19
CP000628_0031 1/1 592 660 .. 1 87 [] 64.2 6.8e-18
CP000628_3428 1/1 233 298 .. 1 87 [] 59.3 1.7e-16
CP000628_3388 1/1 200 263 .. 1 87 [] 57.6 5.2e-16
CP000628_1695 1/1 142 206 .. 1 87 [] 53.3 8.5e-15
CP000628_3034 1/1 230 295 .. 1 87 [] 52.1 1.9e-14
CP000628_0058 1/1 221 287 .. 1 87 [] 42.8 7.8e-12
CP000628_1124 1/1 242 307 .. 1 87 [] 41.9 1.4e-11
CP000628_1697 1/1 507 579 .. 1 87 [] 41.0 2.6e-11
CP000628_3408 1/1 241 306 .. 1 87 [] 30.3 2.7e-08

Alignments of top-scoring domains:
CP000628_1126: domain 1 of 1, from 545 to 614: score 100.6, E = 3.3e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++e+L+++++ ++l++
CP000628_1 545 AKSEFLANMSHELRTPLNAILGFSEILQDQMF------GPLGSSR-- 583

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i++++++ll+ ind+Ld+s+ieag
CP000628_1 584 ---------YNEYAKDIHDSGKHLLNVINDILDMSKIEAG 614

CP000628_2521: domain 1 of 1, from 548 to 613: score 99.1, E = 8.9e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g+aelL + t+l++ q
CP000628_2 548 AKSEFLANMSHEIRTPMNGVLGMAELLAK---------TDLDARQ-- 583

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i ++++ ll +ind+Ld+s+i+ag
CP000628_2 584 ----------KTFIDIIVKSGNALLTIINDILDFSKIDAG 613

CP000628_2055: domain 1 of 1, from 259 to 328: score 94.5, E = 1.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++ +e+ ++l+ +
CP000628_2 259 AKSRFLASMSHELRTPLNAILGFSEVMSAEVM------GPLNNAT-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yrey+ i+r++++ll+Lin++Ldlsrieag
CP000628_2 298 ---------YREYTTDIHRSGQHLLNLINEILDLSRIEAG 328

CP000628_1104: domain 1 of 1, from 238 to 307: score 88.3, E = 1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++++L e++ ++l +
CP000628_1 238 AKSRFLAAVSHELRTPLNAILGFSDILSGEYF------GKLENNRQ- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+ i++++ +ll+ +n +Ld+s+ieag
CP000628_1 278 ----------REYVGLIRQSGAHLLSVVNTMLDMSKIEAG 307

CP000628_0479: domain 1 of 1, from 254 to 319: score 81.5, E = 8.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks++la++sHE+RTPL++I+g+ +lL t+l+ eq
CP000628_0 254 AKSRLLATVSHEIRTPLSGILGMNHLLAQ---------TPLTLEQ-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl i+++++ l +L++dlLd+s ie +
CP000628_0 290 ----------ANYLTGIRQSGNALVQLVEDLLDFSTIEVN 319

CP000628_0581: domain 1 of 1, from 198 to 265: score 78.7, E = 5.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+++rg++e+++ ++++ + +
CP000628_0 198 MRSDFVANASHELRTPLASLRGFIETIQG--------PAKADLKAQ- 235

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ +++ r++rL++dlL lsr+e
CP000628_0 236 ----------QRFLGIMFDQTTRMSRLVDDLLSLSRLELK 265

CP000628_2625: domain 1 of 1, from 676 to 742: score 78.5, E = 6.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELRTPL+a++gya++L++ d++ +++
CP000628_2 676 AKSRYVVGLSHELRTPLNAVLGYAQILER--------DETIPAPR-- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+r+ae+l+ Li+ lLd+s+ieag
CP000628_2 713 ----------QSSLKVIRRSAEHLSGLIDGLLDISKIEAG 742

CP000628_0732: domain 1 of 1, from 958 to 1027: score 73.1, E = 2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHE+RTPL+aI+g+++++ + ++ +
CP000628_0 958 HKTDFLARVSHEIRTPLNAIIGFSDMMAG------ERFGPIGHSR-- 996

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey i r++++ l+++ndlLd+s+ieag
CP000628_0 997 ---------YVEYATDIGRSGRHVLDIVNDLLDISKIEAG 1027

CP000628_0036: domain 1 of 1, from 376 to 441: score 68.8, E = 3.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++ ++ +
CP000628_0 376 AIESFAADVSHELKNPLTSLRSAVETLPL---------AKSDDSK-- 411

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++i+++++rl+rLi+d+ d sr++a+
CP000628_0 412 ----------KRLMDVIQHDVRRLDRLISDISDASRLDAE 441

CP000628_0031: domain 1 of 1, from 592 to 660: score 64.2, E = 6.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g+++lL++ +g + l++ q
CP000628_0 592 LKNDFVQHVSYELRSPLTNIIGFTDLLKT------PGIGSLNDRQ-- 630

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ i ++ ll L+nd+Ldl+ +ag
CP000628_0 631 ----------AEYIDHISTSSAVLLTLVNDILDLATVDAG 660

CP000628_3428: domain 1 of 1, from 233 to 298: score 59.3, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++n++H+LRTPL+ I++ a+++ + ++ ++
CP000628_3 233 AQRRFVSNAAHQLRTPLALISTQASVAAR---------EADNARR-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ +++++++ rL ++lL+lsr+e g
CP000628_3 269 ----------DEALQALRSSTKQVTRLASQLLTLSRAEPG 298

CP000628_3388: domain 1 of 1, from 200 to 263: score 57.6, E = 5.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELR PL+ +++++ +L+ ++ ++
CP000628_3 200 AQQRLFHDVSHELRSPLSRLQAAVGVLRQ------------NPAKL- 233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++++re+erl+ L+ ++L+l+r+ ag
CP000628_3 234 ----------DVMLDRMDREVERLDVLVGEILTLARLTAG 263

CP000628_1695: domain 1 of 1, from 142 to 206: score 53.3, E = 8.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++l+HE+++PL++Irg+a+lL+ +++
CP000628_1 142 SVTGLASMLAHEIKNPLSGIRGAAQLLEQ----------SVEDDD-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ +L++++ +s +
CP000628_1 177 ----------RALTRLICDETDRIVSLVDRMEVFSDERPI 206

CP000628_3034: domain 1 of 1, from 230 to 295: score 52.1, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +ef+an +HELRTP+++ ++ ++ L + el++ +
CP000628_3 230 AEREFTANSAHELRTPIAGALAQTQRLIA----------ELPAGPL- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +i+ ++ l rL + lL+lsr++ag
CP000628_3 266 ----------VERAGRIETSLSNLGRLAEKLLQLSRAQAG 295

CP000628_0058: domain 1 of 1, from 221 to 287: score 42.8, E = 7.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL++I+ a+ +++ el e++r
CP000628_0 221 QLDGLAAAAAHELGTPLATISVVAKEMER----------ELKEDDR- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re + +++++er+++++++l +ls ++
CP000628_0 257 ---------FREDVALLRSQSERCRDILRRLTTLSAEDEA 287

CP000628_1124: domain 1 of 1, from 242 to 307: score 41.9, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ n++H+L+TPLt +r a +l+ +++ e r
CP000628_1 242 GLRQVSDNIAHDLKTPLTRLRNKAADALD----------NADGEGR- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le i+ e+++l r n lL +sr eag
CP000628_1 278 ----------RVALEGIIGESDQLIRTFNALLMISRVEAG 307

CP000628_1697: domain 1 of 1, from 507 to 579: score 41.0, E = 2.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae +++++ + e +r
CP000628_1 507 AWADVARRIAHEIKNPLTPIQLSAERIRRRFG------KNIAEADR- 546

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p + + ++ti+r++ + r+++++ ++r+ +
CP000628_1 547 -------PVFDQCTDTIIRQVGDIGRMVDEFSSFARMPKP 579

CP000628_3408: domain 1 of 1, from 241 to 306: score 30.3, E = 2.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f ++H+LRTP +++++++++L + se++r
CP000628_3 241 LERRFSDLAAHQLRTPQASVKLLLQMLGN----------SDSEQER- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + + +r +Li++lL l+r +
CP000628_3 277 ----------QAIVADLVASNNRAIHLIEQLLRLARVSHH 306


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 9 0|=
-13 38 2|*==
-12 153 85|======*=====
-11 382 443|============================== *
-10 645 823|================================================== *
-9 718 850|======================================================== *
-8 663 636|================================================*==
-7 476 401|==============================*======
-6 300 230|=================*======
-5 150 126|=========*==
-4 83 67|=====*=
-3 44 35|==*=
-2 32 18|=*=
-1 17 9|*=
0 6 5|*
1 2 2|*
2 2 1|*
> 3 24 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 180.9716
P(chi-square) = 2.695e-32

Total sequences searched: 3744

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: