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5 accessions found for Agrobacterium radiobacter K84  

Data for CP000629  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000629.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000629_1238 CDS_1386957-1384108 96.4 3.2e-27 1
CP000629_1899 CDS_2129347-2127014 77.9 5.7e-22 1
CP000629_1914 CDS_2146099-2148810 75.7 2.4e-21 1
CP000629_0730 CDS_820260-822284 45.9 6.5e-13 1
CP000629_1772 CDS_1981994-1983397 42.1 7.7e-12 1
CP000629_2128 CDS_2385795-2384014 40.8 1.8e-11 1
CP000629_0317 CDS_350907-352403 40.5 2.2e-11 1
CP000629_0020 CDS_27409-28800 40.0 3.2e-11 1
CP000629_0453 CDS_497971-499848 34.6 1e-09 1
CP000629_2095 CDS_2351429-2350047 34.5 1.1e-09 1
CP000629_1712 CDS_1914602-1916200 33.4 2.4e-09 1
CP000629_1231 CDS_1375138-1376460 32.7 3.8e-09 1
CP000629_0148 CDS_173157-171613 32.4 4.5e-09 1
CP000629_0987 CDS_1103169-1102105 30.5 1.5e-08 1
CP000629_1646 CDS_1840341-1839064 28.0 8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000629_1238 1/1 199 264 .. 1 87 [] 96.4 3.2e-27
CP000629_1899 1/1 410 475 .. 1 87 [] 77.9 5.7e-22
CP000629_1914 1/1 670 738 .. 1 87 [] 75.7 2.4e-21
CP000629_0730 1/1 453 520 .. 1 87 [] 45.9 6.5e-13
CP000629_1772 1/1 262 320 .. 1 87 [] 42.1 7.7e-12
CP000629_2128 1/1 213 283 .. 1 87 [] 40.8 1.8e-11
CP000629_0317 1/1 268 326 .. 1 87 [] 40.5 2.2e-11
CP000629_0020 1/1 240 305 .. 1 87 [] 40.0 3.2e-11
CP000629_0453 1/1 256 321 .. 1 87 [] 34.6 1e-09
CP000629_2095 1/1 233 272 .. 1 64 [. 34.5 1.1e-09
CP000629_1712 1/1 314 382 .. 1 87 [] 33.4 2.4e-09
CP000629_1231 1/1 234 292 .. 1 87 [] 32.7 3.8e-09
CP000629_0148 1/1 289 359 .. 1 87 [] 32.4 4.5e-09
CP000629_0987 1/1 128 198 .. 1 87 [] 30.5 1.5e-08
CP000629_1646 1/1 210 251 .. 1 66 [. 28.0 8e-08

Alignments of top-scoring domains:
CP000629_1238: domain 1 of 1, from 199 to 264: score 96.4, E = 3.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+++lL + tel++ q
CP000629_1 199 AKSLFLANMSHEIRTPMNAILGFSHLLGR---------TELTARQ-- 234

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ +i+ +++rll+L+ d+Ld+s+ieag
CP000629_1 235 ----------HDYVTKIRGASDRLLSLLKDILDFSKIEAG 264

CP000629_1899: domain 1 of 1, from 410 to 475: score 77.9, E = 5.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s f + lsHE+RTPL++I+g+a++L++ +l+e+++
CP000629_1 410 ARSAFHSRLSHEFRTPLNSILGFAQILEM----------DLDEPDA- 445

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ilr++++ll+L++dlLdl+ri+ag
CP000629_1 446 ----------QASLAQILRAGRHLLSLLDDLLDLARIDAG 475

CP000629_1914: domain 1 of 1, from 670 to 738: score 75.7, E = 2.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l ++sH+L+TPL+aI+g+a +L+++l +++s e+r
CP000629_1 670 LRSALLTSISHDLKTPLAAILGAAGTLRDYL-------ETMSHEDR- 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t+ +e+erl+r i +lLd+++ie+g
CP000629_1 709 ----------VDLLSTVVDESERLNRFIANLLDMTKIESG 738

CP000629_0730: domain 1 of 1, from 453 to 520: score 45.9, E = 6.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e +a+++HE+++P+++++g++e+++e v ++d++ + +
CP000629_0 453 VIGEITAGVAHEINNPIAVMQGNLEVIRE----VMGSDADNASTE-- 493

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+++ +r+++++ lL++++ ++
CP000629_0 494 -------------FRLIDQQMHRISEIVTKLLQFAKPQEY 520

CP000629_1772: domain 1 of 1, from 262 to 320: score 42.1, E = 7.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++a++sH+LRTPLt++r+ ae + +
CP000629_1 262 DRLRLFASISHDLRTPLTTLRLKAEFIDN------------------ 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e i ++ l + + L ++r+e
CP000629_1 291 ----------DEVREDIVATIDELTTICEATLAFTRAEVS 320

CP000629_2128: domain 1 of 1, from 213 to 283: score 40.8, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+LR+P +a+++++++L l+++++ + ++
CP000629_2 213 SKTRFLAAASHDLRQPTHALSLLVSTLAI-----LGQRGDVASRTA- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ +++ + l+ L+n lLd+sr++ag
CP000629_2 254 ----------RELAAKAKAVVGNLSGLLNALLDISRLDAG 283

CP000629_0317: domain 1 of 1, from 268 to 326: score 40.5, E = 2.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++ H+LRTPLt++r+ +e ++
CP000629_0 268 DRTRMLAAIGHDLRTPLTSLRLRTEFVKD------------------ 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++l+ ++ l+++ + ++r e+
CP000629_0 297 ----------ADIQQKMLSTIDELQSMTEAAISFARGEST 326

CP000629_0020: domain 1 of 1, from 240 to 305: score 40.0, E = 3.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+ n+ H+LRTPL+ Ir+ + l + ++ +e
CP000629_0 240 ALRHFTGNAGHQLRTPLAIIRTQLALSAR---------ATSLDEA-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ++ ++++ + +r++ +lL +++ ea
CP000629_0 276 ----------REAARKGDEAVAHAERILAQLLLMAKVEAA 305

CP000629_0453: domain 1 of 1, from 256 to 321: score 34.6, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ Lt+I+g++e++++ l ++++
CP000629_0 256 AVGQLTGGLAHDFNNLLTVISGNLEMIEA----------RLQDPKL- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +a+ +L +lL + r +
CP000629_0 292 ----------LSLVLEAQAAADDGAKLTGQLLAFGRRQPL 321

CP000629_2095: domain 1 of 1, from 233 to 272: score 34.5, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sH+LRTPLt +r+ ae ++ +e +
CP000629_2 233 SRTRMLSSISHDLRTPLTRLRMRAERCEQ-------------PELQ- 265

peLRledpeyreyleti<-*
r++l i
CP000629_2 266 ----------RQMLADI 272

CP000629_1712: domain 1 of 1, from 314 to 382: score 33.4, E = 2.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++P+++Ir+ya+ + l+ +q++
CP000629_1 314 ILGQVAAGVAHEINQPVATIRAYADNAHI----------FLDRKQIA 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p +e l +i +er+ + ++l ++r +
CP000629_1 351 PV--------KENLTSIAALTERIGTITEELKAFARKGRS 382

CP000629_1231: domain 1 of 1, from 234 to 292: score 32.7, E = 3.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sH+ RTPLt +r+ +e +++
CP000629_1 234 GRTRMLRGISHDVRTPLTRLRLRTERMQD------------------ 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +l +++++++L+ + L + r e
CP000629_1 263 ----------GALREALLVDIDHIDSLLAESLNYLRDEYA 292

CP000629_0148: domain 1 of 1, from 289 to 359: score 32.4, E = 4.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE ++PL+a+ ++ e+ l++l ++ e + +++
CP000629_0 289 TLGELTASIAHEVNQPLAAVVTNGEAGLRWL-----KRVEPNLDEV- 329

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ +a+r + i+ l+ ls
CP000629_0 330 ----------AASMQRMIADARRAGEVIRHLRALSSKTDS 359

CP000629_0987: domain 1 of 1, from 128 to 198: score 30.5, E = 1.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+ +++HE +P+taI ++ ++l++l + t+ + e++
CP000629_0 128 TMGELSTSIAHEVSQPITAIVANGNAALRWL-----SATPPDREEA- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i ++a r + i++++ l ++
CP000629_0 169 ----------RRALDRIVKDAGRAGEVISRVRSLVARASP 198

CP000629_1646: domain 1 of 1, from 210 to 251: score 28.0, E = 8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++a++ H+LRTP+t +r+ ae +++ +e+r
CP000629_1 210 SRMRLVAAAGHDLRTPMTRMRLRAEFIKD-------------DEDR- 242

peLRledpeyreyletilr<-*
r+ l+ +++
CP000629_1 243 ----------RKWLSDLEE 251


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 5 0|=
-13 14 1|*=
-12 65 54|=====*==
-11 179 280|==================== *
-10 413 519|============================================== *
-9 527 536|==========================================================*
-8 430 401|============================================*===
-7 298 253|============================*=====
-6 171 145|================*==
-5 112 79|========*====
-4 65 42|====*===
-3 28 22|==*=
-2 18 11|=*
-1 14 6|*=
0 2 3|*
1 0 1|*
2 0 0|
3 2 0|=
4 1 0|=
> 5 19 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 113.7845
P(chi-square) = 3.206e-19

Total sequences searched: 2363

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: