hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000629.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000629_1901 CDS_2131103-2130009 62.0 3.1e-18 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000629_1901 1/1 160 226 .. 1 70 [] 62.0 3.1e-18
Alignments of top-scoring domains:
CP000629_1901: domain 1 of 1, from 160 to 226: score 62.0, E = 3.1e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ERaR A +LHD+v+QsL ++ l+le+a d + + ++ l++
CP000629_1 160 ERARVAYDLHDGVAQSLVSLLLHLEAATV----GQDIDvQTAQKLTN 202
irelarealaevRrllgdLRpaal<-*
+ +lar++ ++R ++ dLRpa+l
CP000629_1 203 CIDLARRCVGDIRLAIADLRPAEL 226
Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 5 0|=
-13 13 0|==
-12 46 26|===*==
-11 83 216|=========== *
-10 286 502|==================================== *
-9 457 570|==========================================================*
-8 413 439|==================================================== *
-7 357 276|==================================*==========
-6 219 156|===================*========
-5 225 83|==========*==================
-4 98 43|=====*=======
-3 71 22|==*======
-2 30 11|=*==
-1 24 5|*==
0 11 2|*=
1 8 1|*
2 8 0|=
3 3 0|=
4 0 0|
> 5 6 -|=
% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 757.0353
P(chi-square) = 0
Total sequences searched: 2363
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
