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Classification of phyla is from NCBI page
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132 projects found  

7 accessions found for Agrobacterium vitis S4  

Data for CP000633  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000633.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000633_1014 CDS_1152515-1150143 95.9 6.1e-27 1
CP000633_2447 CDS_2783810-2779962 93.4 3.1e-26 1
CP000633_1499 CDS_1685964-1684429 93.2 3.6e-26 1
CP000633_0321 CDS_354824-356458 88.1 9.9e-25 1
CP000633_0402 CDS_443179-445434 84.6 9.8e-24 1
CP000633_0378 CDS_418486-417227 83.9 1.6e-23 1
CP000633_0963 CDS_1093529-1095328 83.6 1.9e-23 1
CP000633_0618 CDS_712508-708276 78.3 6e-22 1
CP000633_2549 CDS_2897425-2900802 77.9 7.7e-22 1
CP000633_0038 CDS_34514-36286 70.9 7.3e-20 1
CP000633_0043 CDS_39579-42314 64.4 5.1e-18 1
CP000633_2429 CDS_2760853-2759432 60.5 6.7e-17 1
CP000633_1557 CDS_1748035-1749180 55.4 1.9e-15 1
CP000633_1559 CDS_1750835-1753114 49.0 1.2e-13 1
CP000633_0475 CDS_541524-538015 47.7 2.9e-13 1
CP000633_0052 CDS_57548-56244 43.1 5.6e-12 1
CP000633_1012 CDS_1145685-1147091 40.2 3.7e-11 1
CP000633_2305 CDS_2622390-2623712 33.1 3.8e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000633_1014 1/1 545 614 .. 1 87 [] 95.9 6.1e-27
CP000633_2447 1/1 708 773 .. 1 87 [] 93.4 3.1e-26
CP000633_1499 1/1 261 330 .. 1 87 [] 93.2 3.6e-26
CP000633_0321 1/1 19 84 .. 1 87 [] 88.1 9.9e-25
CP000633_0402 1/1 245 310 .. 1 87 [] 84.6 9.8e-24
CP000633_0378 1/1 198 265 .. 1 87 [] 83.9 1.6e-23
CP000633_0963 1/1 275 344 .. 1 87 [] 83.6 1.9e-23
CP000633_0618 1/1 1177 1246 .. 1 87 [] 78.3 6e-22
CP000633_2549 1/1 675 741 .. 1 87 [] 77.9 7.7e-22
CP000633_0038 1/1 352 417 .. 1 87 [] 70.9 7.3e-20
CP000633_0043 1/1 679 747 .. 1 87 [] 64.4 5.1e-18
CP000633_2429 1/1 254 319 .. 1 87 [] 60.5 6.7e-17
CP000633_1557 1/1 138 202 .. 1 87 [] 55.4 1.9e-15
CP000633_1559 1/1 508 580 .. 1 87 [] 49.0 1.2e-13
CP000633_0475 1/1 801 866 .. 1 87 [] 47.7 2.9e-13
CP000633_0052 1/1 211 277 .. 1 87 [] 43.1 5.6e-12
CP000633_1012 1/1 240 305 .. 1 87 [] 40.2 3.7e-11
CP000633_2305 1/1 237 295 .. 1 87 [] 33.1 3.8e-09

Alignments of top-scoring domains:
CP000633_1014: domain 1 of 1, from 545 to 614: score 95.9, E = 6.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++e+L ++++ ++ ++++
CP000633_1 545 AKSEFLANMSHELRTPLNAILGFSEILSTGMF------GPIGSPK-- 583

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i++++++ll+ ind+Ld+s+ieag
CP000633_1 584 ---------YGEYARDIHDSGKHLLNVINDILDMSKIEAG 614

CP000633_2447: domain 1 of 1, from 708 to 773: score 93.4, E = 3.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP+++++g++elLl ++l++ q
CP000633_2 708 AKSRFLANMSHEIRTPMSGVLGMTELLLS---------SNLDARQ-- 743

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i +++++ll +ind+ d+s+i+ g
CP000633_2 744 ----------KTFVDVIVKSGRSLLTIINDIIDFSKIDDG 773

CP000633_1499: domain 1 of 1, from 261 to 330: score 93.2, E = 3.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++ e+ ++l+ +
CP000633_1 261 AKSRFLASMSHELRTPLNAILGFSEVMAQEV------LGPLNNPL-- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yrey i+r++++ll+Lin++Ldlsrieag
CP000633_1 300 ---------YREYSGDIHRSGQHLLNLINEILDLSRIEAG 330

CP000633_0321: domain 1 of 1, from 19 to 84: score 88.1, E = 9.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sHE+RTPL++I+g+++lL + t+ls+eq
CP000633_0 19 VRTRLLATVSHEMRTPLNGILGMSHLLGR---------TDLSPEQ-- 54

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+ i +++e+l++Li dlLd++ +e+g
CP000633_0 55 ----------RNYLSGIVQAGESLQQLIADLLDYTTLETG 84

CP000633_0402: domain 1 of 1, from 245 to 310: score 84.6, E = 9.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+a++ HE+RTPL+aI+g+aelL+ + l+++
CP000633_0 245 AKSQFMATMGHEIRTPLNAILGMAELLEY---------SQLPSDA-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti++++e ll+ in++Ld+s+ie+g
CP000633_0 281 ----------LQSVKTIRSSGEALLEVINEILDYSKIEHG 310

CP000633_0378: domain 1 of 1, from 198 to 265: score 83.9, E = 1.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+++rg++e+Ll +++++ +++
CP000633_0 198 MRSDFVANASHELRTPLASLRGFIETLLG---------PARNDLKAQ 235

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++l++a+r++rL++dlL lsr+e
CP000633_0 236 ----------ERFLGIMLDQANRMSRLVDDLLSLSRLELK 265

CP000633_0963: domain 1 of 1, from 275 to 344: score 83.6, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++++L +++ + + +e +
CP000633_0 275 AKSRFLAAVSHELRTPLNAILGFSDILMGDYF------GRMEDERH- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++ i++++ +ll+ +n +Ld+ rieag
CP000633_0 315 ----------REYVRLIRQSGGHLLSVVNTMLDMCRIEAG 344

CP000633_0618: domain 1 of 1, from 1177 to 1246: score 78.3, E = 6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHE+RTPL+aI+g+a+++ + + ++ +
CP000633_0 1177 HKTDFLARVSHEIRTPLNAIIGFADIMAD------ERFGPIGHGR-- 1215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey i r++++ l+++ndlLd+s+ieag
CP000633_0 1216 ---------YAEYAADIGRSGRHVLDIVNDLLDISKIEAG 1246

CP000633_2549: domain 1 of 1, from 675 to 741: score 77.9, E = 7.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELRTPL+a++gya+lL+ d++ +++
CP000633_2 675 AKSRYVVGLSHELRTPLNAVMGYAQLLEQ--------DDTIPAPR-- 711

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i+r+a++l+ Li+ lLd+s+ieag
CP000633_2 712 ----------QSAIRVIRRSADHLSGLIDGLLDISKIEAG 741

CP000633_0038: domain 1 of 1, from 352 to 417: score 70.9, E = 7.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++ + +
CP000633_0 352 AIESFAADVSHELKNPLTSLRSAVETLPL---------AKTDVSK-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rLi+d+ d sr++a+
CP000633_0 388 ----------QRLLDVIQHDVRRLDRLISDISDASRLDAE 417

CP000633_0043: domain 1 of 1, from 679 to 747: score 64.4, E = 5.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g+++lL+ + ++l+e q
CP000633_0 679 LKNDFVQHISYELRSPLTNIIGFTDLLKSSAI------GPLNERQ-- 717

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey++ i ++ ll ++nd+Ldl+ +ag
CP000633_0 718 ----------GEYVDHISTSSAVLLTIVNDILDLATVDAG 747

CP000633_2429: domain 1 of 1, from 254 to 319: score 60.5, E = 6.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+an++H+LRTPLt I++ a+ + + ++ ++
CP000633_2 254 AQKRFVANAAHQLRTPLTLISTQASFAAR---------ETDPARR-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ ++r++++ rL ++lL+l+r+e g
CP000633_2 290 ----------EEALHALIRSTRQVTRLAEQLLTLTRAEPG 319

CP000633_1557: domain 1 of 1, from 138 to 202: score 55.4, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++l+HE+++PL++Irg+a+lL+ ++e+
CP000633_1 138 SVTGLASMLAHEIKNPLSGIRGAAQLLES----------SVPPED-- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ +L++++ +s +
CP000633_1 173 ----------RSLTRLICDETDRIVSLVDRMEIFSDERPV 202

CP000633_1559: domain 1 of 1, from 508 to 580: score 49.0, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ g + +se+ +
CP000633_1 508 AWADVARRIAHEIKNPLTPIQLSAERLKRRF-----GKQIASEDRQV 549

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti r++e + r+++++ ++r+ +
CP000633_1 550 ---------FDQCTDTIVRQVEDIGRMVDEFSSFARMPKP 580

CP000633_0475: domain 1 of 1, from 801 to 866: score 47.7, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H++ +PL+a r+y+++L e l+ ++
CP000633_0 801 GKTRFFAAAGHDILQPLNAARLYSSALVE----------RLGQSEN- 836

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i++++e+ ++++ +Ldlsr+++g
CP000633_0 837 ----------AGLVRNIDSALESVEQILGAVLDLSRLDTG 866

CP000633_0052: domain 1 of 1, from 211 to 277: score 43.1, E = 5.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL++I+ a+ +++ el+ + r
CP000633_0 211 QLDGLAAAAAHELGTPLATISVVAKEMER----------ELGKDPR- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e ++ +++++er+++++ +l +ls ++
CP000633_0 247 ---------FGEDVQLLRSQSERCRDILKRLTTLSAEDEA 277

CP000633_1012: domain 1 of 1, from 240 to 305: score 40.2, E = 3.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ n++H+L+TPLt +r a +l+ ++ +
CP000633_1 240 GLRQVSDNIAHDLKTPLTRLRNKAADALA---------EDDDLLR-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++le i+ e+++l r n lL +sr eag
CP000633_1 276 ----------RQALEGIIGESDQLIRTFNALLMISRVEAG 305

CP000633_2305: domain 1 of 1, from 237 to 295: score 33.1, E = 3.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l ++sH+LRT Lt ++ + l+ +
CP000633_2 237 QRTAMLTGVSHDLRTILTRFKLQLALAGD------------------ 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le + +++e ++++++ + +++ ea+
CP000633_2 266 ----------NPDLEPLNEDVEAMQSMLEGYMAFAKGEAE 295


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 4 0|=
-13 26 2|*==
-12 108 73|======*===
-11 315 383|============================= *
-10 562 711|==================================================== *
-9 627 734|========================================================= *
-8 563 549|=================================================*==
-7 410 346|===============================*======
-6 261 199|==================*=====
-5 146 109|=========*====
-4 82 58|=====*==
-3 58 30|==*===
-2 25 16|=*=
-1 10 8|*
0 6 4|*
1 2 2|*
2 2 1|*
> 3 27 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 156.2084
P(chi-square) = 8.005e-28

Total sequences searched: 3234

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: