hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000634.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000634_0443 CDS_538528-539763 86.8 4.2e-25 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000634_0443 1/1 223 307 .. 1 94 [] 86.8 4.2e-25
Alignments of top-scoring domains:
CP000634_0443: domain 1 of 1, from 223 to 307: score 86.8, E = 4.2e-25
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+ HRVKNNL +I+S++ LQar ++d v + Lr nRV +
CP000634_0 223 EVDHRVKNNLLTIASIVKLQARMTRDDTV-----RHTLRSVLNRVEA 264
mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
++++++L +s d+++ d++++ ++L+ ++ ++ +g+++i +
CP000634_0 265 LSTVQRKLFTSSDVGRFDVADFARELVIDIVNALKRGDINIT----M 307
Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 2 0|=
-13 4 6|=*
-12 36 69|======== *
-11 253 192|======================================*============
-10 231 249|=============================================== *
-9 207 210|=========================================*
-8 140 141|============================*
-7 69 83|============== *
-6 60 46|=========*==
-5 14 25|=== *
-4 13 13|==*
-3 15 6|=*=
-2 2 3|*
-1 1 1|*
0 1 0|=
1 1 0|=
2 0 0|
3 1 0|=
4 0 0|
> 5 3 -|=
% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 56.7578
P(chi-square) = 5.623e-09
Total sequences searched: 1054
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
