Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

6 accessions found for Aeromonas salmonicida subsp. salmonicida A449  

Data for CP000644  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000644.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000644_3659 CDS_4209286-4211958 103.5 5.5e-29 1
CP000644_2119 CDS_2415282-2412469 97.4 3e-27 1
CP000644_3231 CDS_3771495-3774206 94.1 2.5e-26 1
CP000644_1958 CDS_2243461-2247420 81.7 8e-23 1
CP000644_1131 CDS_1287791-1289086 75.4 5.1e-21 1
CP000644_0014 CDS_18717-16129 74.9 7.1e-21 1
CP000644_3045 CDS_3545257-3541829 74.4 9.6e-21 1
CP000644_3145 CDS_3668858-3666546 73.9 1.4e-20 1
CP000644_2876 CDS_3340966-3344403 73.6 1.7e-20 1
CP000644_2579 CDS_2976642-2974546 68.3 5.3e-19 1
CP000644_0228 CDS_270715-272115 65.0 4.5e-18 1
CP000644_4043 CDS_4649807-4651249 63.8 1e-17 1
CP000644_3845 CDS_4414477-4415532 63.7 1e-17 1
CP000644_1379 CDS_1575043-1576077 56.5 1.1e-15 1
CP000644_3914 CDS_4496985-4498340 55.4 2.3e-15 1
CP000644_3735 CDS_4302567-4301182 53.1 1.1e-14 1
CP000644_3342 CDS_3886069-3887358 51.0 4e-14 1
CP000644_3814 CDS_4380921-4379623 50.8 4.9e-14 1
CP000644_0995 CDS_1123388-1121943 48.4 2.2e-13 1
CP000644_2864 CDS_3328311-3326152 44.6 2.7e-12 1
CP000644_3646 CDS_4195179-4196438 44.0 3.9e-12 1
CP000644_0115 CDS_145798-144473 40.7 3.5e-11 1
CP000644_3960 CDS_4550135-4551580 29.0 7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000644_3659 1/1 159 224 .. 1 87 [] 103.5 5.5e-29
CP000644_2119 1/1 279 344 .. 1 87 [] 97.4 3e-27
CP000644_3231 1/1 290 355 .. 1 87 [] 94.1 2.5e-26
CP000644_1958 1/1 711 776 .. 1 87 [] 81.7 8e-23
CP000644_1131 1/1 205 270 .. 1 87 [] 75.4 5.1e-21
CP000644_0014 1/1 633 701 .. 1 87 [] 74.9 7.1e-21
CP000644_3045 1/1 555 620 .. 1 87 [] 74.4 9.6e-21
CP000644_3145 1/1 282 347 .. 1 87 [] 73.9 1.4e-20
CP000644_2876 1/1 473 540 .. 1 87 [] 73.6 1.7e-20
CP000644_2579 1/1 333 398 .. 1 87 [] 68.3 5.3e-19
CP000644_0228 1/1 246 314 .. 1 87 [] 65.0 4.5e-18
CP000644_4043 1/1 255 320 .. 1 87 [] 63.8 1e-17
CP000644_3845 1/1 131 196 .. 1 87 [] 63.7 1e-17
CP000644_1379 1/1 122 188 .. 1 87 [] 56.5 1.1e-15
CP000644_3914 1/1 237 299 .. 1 87 [] 55.4 2.3e-15
CP000644_3735 1/1 257 315 .. 1 87 [] 53.1 1.1e-14
CP000644_3342 1/1 212 275 .. 1 87 [] 51.0 4e-14
CP000644_3814 1/1 219 279 .. 1 87 [] 50.8 4.9e-14
CP000644_0995 1/1 258 323 .. 1 87 [] 48.4 2.2e-13
CP000644_2864 1/1 455 522 .. 1 87 [] 44.6 2.7e-12
CP000644_3646 1/1 228 294 .. 1 87 [] 44.0 3.9e-12
CP000644_0115 1/1 211 272 .. 1 87 [] 40.7 3.5e-11
CP000644_3960 1/1 280 338 .. 1 87 [] 29.0 7e-08

Alignments of top-scoring domains:
CP000644_3659: domain 1 of 1, from 159 to 224: score 103.5, E = 5.5e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++aI+g+a+l+l t l+++q
CP000644_3 159 AKSDFLANMSHEIRTPMNAILGMAHLALQ---------TRLDPQQ-- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ +i+r+a++ll +ind+Ld+s+ieag
CP000644_3 195 ----------ADYVGKIQRSAQHLLGIINDILDFSKIEAG 224

CP000644_2119: domain 1 of 1, from 279 to 344: score 97.4, E = 3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++aI+g+++l+l tel+ +q
CP000644_2 279 AKSDFLANMSHEIRTPMNAIIGFSSLALQ---------TELDQQQ-- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl++i+++++ ll Lind+Ldl++ e+g
CP000644_2 315 ----------RDYLSKIKSSSDTLLLLINDILDLTKVESG 344

CP000644_3231: domain 1 of 1, from 290 to 355: score 94.1, E = 2.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ Ll+ t+l++ q
CP000644_3 290 VKSEFLANMSHELRTPLNGVIGFTRQLLK---------TALTPSQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y +ti+++a+ ll +ind+Ld+s++eag
CP000644_3 326 ----------TDYMQTIEKSARNLLGIINDILDFSKLEAG 355

CP000644_1958: domain 1 of 1, from 711 to 776: score 81.7, E = 8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g++ lL++ ++ + q
CP000644_1 711 AKSAFLANMSHEIRTPMNAILGLTYLLKR---------DTPDHTQ-- 746

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+i+++a++ll +i d+Ldls+i+ag
CP000644_1 747 ----------HDRLEKIDNAAQHLLTIITDILDLSKIDAG 776

CP000644_1131: domain 1 of 1, from 205 to 270: score 75.4, E = 5.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f++n+sHELRTPLt+++gy+e+ +e + ++
CP000644_1 205 TRKHFVSNVSHELRTPLTVLKGYLEMTEE----------PPPPAL-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++ +++ r+++L+n+lL+lsriea
CP000644_1 240 ---------WAKAHRVMMEQTIRMDNLVNQLLTLSRIEAA 270

CP000644_0014: domain 1 of 1, from 633 to 701: score 74.9, E = 7.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+L+TPL++I+g+ ++Lle++ + s+e+r
CP000644_0 633 MRAALLSSVSHDLKTPLATIMGAGSTLLEYG-------DRISPEDR- 671

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+++++ea+rl + +++lLd++ri+++
CP000644_0 672 ----------SELLHSVQDEARRLHSYVQNLLDMTRIGSP 701

CP000644_3045: domain 1 of 1, from 555 to 620: score 74.4, E = 9.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k efla++sHE+RTP+++I g+ae L t l+ eq
CP000644_3 555 KKAEFLATMSHEIRTPMNSIVGMAEQLSF---------TSLDLEQ-- 590

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ +i + ae ll+Li ++Ld+s+++ g
CP000644_3 591 ----------RQMVAIINQGAEGLLQLIGNVLDYSKLDVG 620

CP000644_3145: domain 1 of 1, from 282 to 347: score 73.9, E = 1.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +L + t+l++ q
CP000644_3 282 DKTTFISTISHELRTPLNGIVGLSRMLMD---------TPLDPRQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ti+ +a l ++ nd+ dl +++
CP000644_3 318 ----------HQQLKTIHLSAVTLGNIFNDIIDLDKLDRR 347

CP000644_2876: domain 1 of 1, from 473 to 540: score 73.6, E = 1.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+lan sHELRTP+++I+g+ae +l+ + ++l+e q
CP000644_2 473 LKDELLANTSHELRTPIHGIKGMAESMLASQ-------QDLTEGQ-- 510

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i+++a+ l rL++dlLd+ +++ g
CP000644_2 511 ----------QNQLGLIIKSADGLARLVDDLLDYHQMRYG 540

CP000644_2579: domain 1 of 1, from 333 to 398: score 68.3, E = 5.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++ HE+R P++a++g+++lL+ + l ++q
CP000644_2 333 AKSQFLAMMTHEIRSPMNAVLGMLDLLQH---------AQLEPQQ-- 368

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l + ++a+ l+ +i+d+Ld+s+ie+
CP000644_2 369 ----------QTLLGHATHSARLLQTIIDDVLDFSKIESH 398

CP000644_0228: domain 1 of 1, from 246 to 314: score 65.0, E = 4.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +fl+++sHEL+TPL+++r ++lL e+l ++l+++q
CP000644_0 246 QKYQFLRHVSHELKTPLAVLREGSDLLGEQL------VGPLTPDQ-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + +++ ++rl+ Li++lLd+ r+ ++
CP000644_0 285 ----------QEICQMLEENSRRLQTLIERLLDFNRLSQQ 314

CP000644_4043: domain 1 of 1, from 255 to 320: score 63.8, E = 1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l HEL+ PL+aIrg+ elL e ++ +e
CP000644_4 255 YIESYVHSLTHELKSPLAAIRGAGELLAE---------APPPEVA-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ i e+ r+++Li+++L+l+++e+g
CP000644_4 291 ----------RRFIGNINLETARMQQLIERMLQLAKLESG 320

CP000644_3845: domain 1 of 1, from 131 to 196: score 63.7, E = 1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e++++l+HE+++PL ++rg+a+lL++ el+++ +
CP000644_3 131 AAKELVRGLAHEIKNPLGGLRGAAQLLQK----------ELPDPAL- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+ +i+++a+rl+ L+++lL r +
CP000644_3 167 ----------REYTGIIIEQADRLRVLVDRLLGPQRPGRH 196

CP000644_1379: domain 1 of 1, from 122 to 188: score 56.5, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+l+H++RTPL+a ++ya L + +l +e r
CP000644_1 122 ALGNMAASLAHQIRTPLSAAMLYAANLAN---------RTLKPESR- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ ++ l+++ind+L ++r + +
CP000644_1 159 ----------SQFQQKLMARLQDLEKQINDILLFARNGDN 188

CP000644_3914: domain 1 of 1, from 237 to 299: score 55.4, E = 2.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++l+++sHELR PLt I+++ l+++ ++ +
CP000644_3 237 KQKQLLSDISHELRSPLTRIQLAQALIRR---------KQGDSNE-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i++e+ rl++Li dlLdlsr ++
CP000644_3 273 -------------LARIESEIGRLDKLIGDLLDLSRVQQH 299

CP000644_3735: domain 1 of 1, from 257 to 315: score 53.1, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTP+t++r+ +e L e
CP000644_3 257 DRTRMLAAISHDLRTPITSLRLRTEFLAE------------------ 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e+i++ ++++++++ L ++r e +
CP000644_3 286 ----------GEDKERIQQTLQQMEQMLAATLSFAREEGQ 315

CP000644_3342: domain 1 of 1, from 212 to 275: score 51.0, E = 4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l ++sHELR PL+ +++++ l++ ++ r
CP000644_3 212 SREQLLHDVSHELRSPLARLQLAIGLAQQ-------------DPAR- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +i+ e++r++++i +lL+l+r+ +g
CP000644_3 245 ---------IEGSLARIQLETHRMDKMIGELLTLTRASHG 275

CP000644_3814: domain 1 of 1, from 219 to 279: score 50.8, E = 4.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a++sH+LRTPLt Ir+++e++ ++
CP000644_3 219 ERNLMMAGVSHDLRTPLTRIRLATEMMSS---------GD------- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i +++ + +i+++ d+ r ++g
CP000644_3 250 ----------EYLKESINADIDESNGIIDQFIDYIRPDEG 279

CP000644_0995: domain 1 of 1, from 258 to 323: score 48.4, E = 2.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ ++HELRTPL+++r ++e +l+ +e ++
CP000644_0 258 REKQFTNEAAHELRTPLAVLRIHSENALA---------AEDDASR-- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+++l +++r +rLi++lL+ +ri+++
CP000644_0 294 ----------QQSLHKMLLALDRSDRLIRQLLTQARIDSQ 323

CP000644_2864: domain 1 of 1, from 455 to 522: score 44.6, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a+++H +++PL++I+g++el++ el +e+ ++
CP000644_2 455 ALGELCAGVAHVINNPLAVILGNVELMKLEL-------GEAAAPV-- 492

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l +l ++er++++ + lL++sr +
CP000644_2 493 ----------SEELALVLAQIERIRAITRSLLQYSRPGDY 522

CP000644_3646: domain 1 of 1, from 228 to 294: score 44.0, E = 3.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef + +sHELRTP +I+g a lL + t+l+++
CP000644_3 228 REQEFSRFASHELRTPNMVIQGSAALLGK--------VTDLPAPA-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+ +a+ + L + +L l r ea
CP000644_3 265 ----------ARATTRIRAAADEMALLTETFLLLGRKEAV 294

CP000644_0115: domain 1 of 1, from 211 to 272: score 40.7, E = 3.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++ +++HELRTPL +r + +L ++ +eq
CP000644_0 211 SRKQLTDAIAHELRTPLVRLRYRLAMLDP---------QPSAAEQ-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++r++ l++Li+++L+++r++ +
CP000644_0 247 --------------QGLERDLGALDALIEEMLTYARLDRP 272

CP000644_3960: domain 1 of 1, from 280 to 338: score 29.0, E = 7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++sH+L+TP+t +r+ +elL +
CP000644_3 280 DRERLFSSISHDLKTPITRLRLRVELLDD------------------ 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++++ l+ ++ L+ +
CP000644_3 309 ----------EVQIGKFNKDLDELELMVKGALQTVKDTDI 338


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-16 1 0|=
-15 0 0|
-14 10 0|=
-13 36 3|*==
-12 172 93|======*======
-11 394 484|============================= *
-10 650 898|=============================================== *
-9 786 927|========================================================= *
-8 707 694|=================================================*=
-7 517 437|===============================*=====
-6 343 251|=================*=======
-5 199 138|=========*=====
-4 99 73|=====*==
-3 63 39|==*==
-2 33 20|=*=
-1 19 10|*=
0 13 5|*
1 4 2|*
2 5 1|*
3 4 0|=
4 5 0|=
> 5 26 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 294.5712
P(chi-square) = 0

Total sequences searched: 4086

Whole sequence top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: