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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Enterobacter sp. 638  

Data for CP000653  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000653.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000653_2296 CDS_2499810-2501606 76.1 4e-22 1
CP000653_2938 CDS_3217830-3219524 69.2 4.1e-20 1
CP000653_0829 CDS_933160-931619 65.7 4.5e-19 1
CP000653_0028 CDS_30076-31575 60.9 1.2e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000653_2296 1/1 390 458 .. 1 70 [] 76.1 4e-22
CP000653_2938 1/1 361 428 .. 1 70 [] 69.2 4.1e-20
CP000653_0829 1/1 315 380 .. 1 70 [] 65.7 4.5e-19
CP000653_0028 1/1 303 369 .. 1 70 [] 60.9 1.2e-17

Alignments of top-scoring domains:
CP000653_2296: domain 1 of 1, from 390 to 458: score 76.1, E = 4e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ ++++ d pe ++ l +i
CP000653_2 390 ERATIARELHDSIAQSLSCMKMQVSCLQMQD--DGLPENSKQLLGQI 434

relarealaevRrllgdLR.paal<-*
r ++++ ++R+ll+++R ++
CP000653_2 435 RNELNTSWVQLRELLTTFRlQLTE 458

CP000653_2938: domain 1 of 1, from 361 to 428: score 69.2, E = 4.1e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++Q Ls +++ql l++r++ ++d+ +a++ ++
CP000653_2 361 ERATIARELHDSLAQVLSYLRIQLALLKRAV--PDDNVPAQTIITDF 405

relarealaevRrllgdLRpaal<-*
+ ++ a +++R+ll+++R +
CP000653_2 406 SRELNNAWRQLRELLTTFRLTLN 428

CP000653_0829: domain 1 of 1, from 315 to 380: score 65.7, E = 4.5e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+++ARELHD++gQ+++ai +q++l++r+ d++ a ea+ +i
CP000653_0 315 TRKHLARELHDEIGQNITAIQIQSQLVKRAG--DTP--LAVEAAGQI 357

relarealaevRrllgdLRpaal<-*
elar+ +R+ll++LRp++l
CP000653_0 358 NELARRIHHSTRQLLRQLRPPVL 380

CP000653_0028: domain 1 of 1, from 303 to 369: score 60.9, E = 1.2e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
R+ ARELHD +gQ+++ai+ q++ ++rl+ pe++ + + +
CP000653_0 303 VRQEVARELHDDIGQTITAIRTQAGIVQRLA-----PEngGVIQSGA 344

eirelarealaevRrllgdLRpaal<-*
i++l+ ++ vRrllg+LRp +l
CP000653_0 345 HIEQLSLGVYDSVRRLLGRLRPRQL 369


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 12 0|=
-13 81 0|======
-12 133 45|==*======
-11 242 377|================= *
-10 676 875|============================================== *
-9 831 993|======================================================== *
-8 635 765|=========================================== *
-7 529 481|================================*===
-6 351 272|==================*=====
-5 267 146|=========*========
-4 148 76|=====*====
-3 93 39|==*====
-2 39 20|=*=
-1 32 10|*==
0 15 5|*
1 11 2|*
2 6 1|*
3 6 0|=
4 1 0|=
> 5 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 658.7397
P(chi-square) = 0

Total sequences searched: 4115

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: