hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000654.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000654_0003 CDS_8372-6810 47.1 1.6e-14 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000654_0003 1/1 159 224 .. 1 87 [] 47.1 1.6e-14
Alignments of top-scoring domains:
CP000654_0003: domain 1 of 1, from 159 to 224: score 47.1, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k ++la +sH+LR+P++aI y+ L+e ++l++
CP000654_0 159 TKAQLLAQVSHDLRQPIHAIGIYITCLRE---------ENLNPSG-- 194
peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i+r++ + +++ +L + +++g
CP000654_0 195 ----------LKMVDNIDRSLVSVSHIFHSMLNFYTLDSG 224
Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 1 0|=
-12 9 2|=*=======
-11 14 14|=============*
-10 22 27|====================== *
-9 28 28|===========================*
-8 19 21|=================== *
-7 13 13|============*
-6 6 7|======*
-5 6 4|===*==
-4 2 2|=*
-3 2 1|*=
> -2 3 -|===
% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 1.7754
P(chi-square) = 0.8793
Total sequences searched: 125
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
