Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

4 accessions found for Mycobacterium gilvum PYR-GCK  

Data for CP000656  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000656.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000656_4658 CDS_4994447-4992957 122.5 1.5e-34 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000656_4658 1/1 294 376 .. 1 94 [] 122.5 1.5e-34

Alignments of top-scoring domains:
CP000656_4658: domain 1 of 1, from 294 to 376: score 122.5, E = 1.5e-34
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar++ ++e +eaL+Es++RV S
CP000656_4 294 EIHHRVKNNLQTVAALLRLQARRTNNPEG-----REALMESVRRVSS 335

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+H+ L++s d + v+++e++++++ + + ++v+s ++ +
CP000656_4 336 IALVHDALSMSVD-EEVNLDEVIDRILPIMNDVAAVDSP---IR--I 376


Histogram of all scores:
score obs exp (one = represents 26 sequences)
----- --- ---
-15 2 0|=
-14 22 0|=
-13 84 32|=*==
-12 285 344|=========== *
-11 1528 958|====================================*======================
-10 1186 1240|============================================== *
-9 858 1047|================================= *
-8 640 702|========================= *
-7 259 417|========== *
-6 200 232|========*
-5 84 125|====*
-4 45 66|==*
-3 22 34|=*
-2 8 18|*
-1 8 9|*
0 1 4|*
1 2 2|*
2 4 1|*
3 1 0|=
4 0 0|
> 5 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 566.4266
P(chi-square) = 0

Total sequences searched: 5241

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: