Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

4 accessions found for Mycobacterium gilvum PYR-GCK  

Data for CP000657  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000657.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000657_0036 CDS_37410-38555 48.6 1.5e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000657_0036 1/1 153 217 .. 1 87 [] 48.6 1.5e-14

Alignments of top-scoring domains:
CP000657_0036: domain 1 of 1, from 153 to 217: score 48.6, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ +l+HE+RTP++++++y+e+ ++++ +l++e+
CP000657_0 153 TRRQLFGDLAHEIRTPVSVLKAYIEAVEDGV-------KTLDPET-- 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++a rl r +d+ l+++e+g
CP000657_0 191 -------------VAVLNDQASRLVRFSDDFAALAQAEEG 217


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 5 0|===
-12 14 6|==*====
-11 35 35|=================*
-10 48 65|======================== *
-9 68 67|=================================*
-8 57 50|========================*====
-7 27 31|============== *
-6 18 18|========*
-5 12 10|====*=
-4 4 5|==*
-3 1 2|*
-2 4 1|*=
-1 3 0|==
> 0 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 14.2097
P(chi-square) = 0.04757

Total sequences searched: 298

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: