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Classification of phyla is from NCBI page
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6 accessions found for Rhodobacter sphaeroides ATCC 17025  

Data for CP000661  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000661.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000661_0015 CDS_22282-24888 90.4 2.2e-25 1
CP000661_1095 CDS_1130542-1131582 84.0 1.4e-23 1
CP000661_1456 CDS_1504778-1507462 79.5 2.6e-22 1
CP000661_3020 CDS_3119863-3117311 75.1 4.7e-21 1
CP000661_2540 CDS_2605739-2604087 68.7 3e-19 1
CP000661_1556 CDS_1615641-1617374 66.2 1.6e-18 1
CP000661_1655 CDS_1720191-1717519 65.6 2.2e-18 1
CP000661_1129 CDS_1172338-1174539 57.0 6.1e-16 1
CP000661_1469 CDS_1515879-1516985 55.2 2e-15 1
CP000661_1424 CDS_1474172-1475491 53.6 5.9e-15 1
CP000661_2352 CDS_2423841-2421541 48.0 2.2e-13 1
CP000661_1471 CDS_1518452-1520713 47.1 4e-13 1
CP000661_1909 CDS_1973819-1972389 46.3 6.9e-13 1
CP000661_0242 CDS_237549-239534 43.9 3.2e-12 1
CP000661_0708 CDS_722237-724051 43.1 5.5e-12 1
CP000661_2931 CDS_3022703-3021315 40.0 4e-11 1
CP000661_2399 CDS_2472851-2474863 38.6 1e-10 1
CP000661_0073 CDS_79371-80768 37.2 2.6e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000661_0015 1/1 352 417 .. 1 87 [] 90.4 2.2e-25
CP000661_1095 1/1 115 182 .. 1 87 [] 84.0 1.4e-23
CP000661_1456 1/1 668 734 .. 1 87 [] 79.5 2.6e-22
CP000661_3020 1/1 365 430 .. 1 87 [] 75.1 4.7e-21
CP000661_2540 1/1 321 386 .. 1 87 [] 68.7 3e-19
CP000661_1556 1/1 206 271 .. 1 87 [] 66.2 1.6e-18
CP000661_1655 1/1 386 452 .. 1 87 [] 65.6 2.2e-18
CP000661_1129 1/1 374 439 .. 1 87 [] 57.0 6.1e-16
CP000661_1469 1/1 133 197 .. 1 87 [] 55.2 2e-15
CP000661_1424 1/1 233 291 .. 1 87 [] 53.6 5.9e-15
CP000661_2352 1/1 395 461 .. 1 87 [] 48.0 2.2e-13
CP000661_1471 1/1 505 576 .. 1 87 [] 47.1 4e-13
CP000661_1909 1/1 84 149 .. 1 87 [] 46.3 6.9e-13
CP000661_0242 1/1 434 504 .. 1 87 [] 43.9 3.2e-12
CP000661_0708 1/1 380 448 .. 1 87 [] 43.1 5.5e-12
CP000661_2931 1/1 211 277 .. 1 87 [] 40.0 4e-11
CP000661_2399 1/1 284 348 .. 1 87 [] 38.6 1e-10
CP000661_0073 1/1 244 308 .. 1 87 [] 37.2 2.6e-10

Alignments of top-scoring domains:
CP000661_0015: domain 1 of 1, from 352 to 417: score 90.4, E = 2.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP+++I g+a+lL e t+l+e+q
CP000661_0 352 AKSAFLANMSHEIRTPMNGIVGMADLLCE---------TPLTEDQ-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + eti++++e ll +ind+Ld+s+iea+
CP000661_0 388 ----------RLFAETIRSSGEALLVIINDILDYSKIEAN 417

CP000661_1095: domain 1 of 1, from 115 to 182: score 84.0, E = 1.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLta++g++e+L+ +++ ++ ++
CP000661_1 115 IRRDFVANVSHELRTPLTALLGFIETLQG---------AAREDPAAR 152

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ rea r++rL++dlL lsr ea+
CP000661_1 153 ----------ARFLAIMAREAGRMNRLVQDLLSLSRVEAE 182

CP000661_1456: domain 1 of 1, from 668 to 734: score 79.5, E = 2.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl+ +sHELRTP+t+Ir+++e+L e ++l++e +
CP000661_1 668 QKDAFLSQISHELRTPMTSIRAFSEILME---------GDLPPEMA- 704

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i++ea rl rL++dlLdls +e+g
CP000661_1 705 ----------ARHARIIHEEAIRLTRLLDDLLDLSVLENG 734

CP000661_3020: domain 1 of 1, from 365 to 430: score 75.1, E = 4.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +fla +sHE+RTPL+++ g +elL t+l+ q
CP000661_3 365 ARADFLAVMSHEMRTPLNGLAGSVELLDQ---------TPLDMRQ-- 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++++++ +a+ ll+ +n +Ld++r ea
CP000661_3 401 ----------RELVSVLRASAQILLDHVNSVLDIARSEAR 430

CP000661_2540: domain 1 of 1, from 321 to 386: score 68.7, E = 3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+++++HE+++PL+++r ++ +L+ ++++e+
CP000661_2 321 ANEQFASDVAHEIKNPLASLRSAVGTLRL---------AKRDEQR-- 356

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rL++d+ sr++++
CP000661_2 357 ----------ERLLDVIEHDVRRLDRLVSDISNASRLDSE 386

CP000661_1556: domain 1 of 1, from 206 to 271: score 66.2, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHELRTPL+aI+g ++ l+ ++++ +
CP000661_1 206 TKDRFLAQMSHELRTPLNAILGIGHAELR---------RAMDPVT-- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l +++r+ae l+ +++d+Ld+s +++g
CP000661_1 242 ----------RERLGVLIRSAEGLSTILDDILDMSAAQQG 271

CP000661_1655: domain 1 of 1, from 386 to 452: score 65.6, E = 2.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHE+RTPL++++++++lL+ +t+l+e q
CP000661_1 386 AKSRFLAVMSHEMRTPLNGLMAASDLLQS--------STDLTERQ-- 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++++ ++ l+++n++L+l+r+
CP000661_1 423 ----------RWLTDIVIGCGSAALDQVNNVLELTRLSDR 452

CP000661_1129: domain 1 of 1, from 374 to 439: score 57.0, E = 6.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+a++sH+L +PL+a ++++ + + ++ +e
CP000661_1 374 SRSRFVAAASHDLLQPLSAAKLFIASIGD---------EAVAPES-- 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l ++++++++ + ++ lLd+s++e+g
CP000661_1 410 ----------REALAKAQKALDSVEGILGALLDISKLESG 439

CP000661_1469: domain 1 of 1, from 133 to 197: score 55.2, E = 2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +l+HE+++PL++I+g+a+l+ + +l +e+
CP000661_1 133 SAIGMAEMLAHEIKNPLAGISGAAQLIAM----------NLAPED-- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + i +e++r+ +L++++ ++ ++ +
CP000661_1 168 ----------RELADLIVEETRRIVKLLEQVEQFGNLRPP 197

CP000661_1424: domain 1 of 1, from 233 to 291: score 53.6, E = 5.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRTPLt +r+ +++L + +e+
CP000661_1 233 QRTLMLSGVSHDLRTPLTRLRLGLSMLSD-------------PEE-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +lr++ ++rL++++L + r +a
CP000661_1 265 -------------AEELLRDVADMERLVDEFLSFVRGDAL 291

CP000661_2352: domain 1 of 1, from 395 to 461: score 48.0, E = 2.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl ++++ +++
CP000661_2 395 AIGQLAGGIAHDFNNLLTAISGHCDLLLL--------RHDREDPE-- 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i++ a+r +L+ +lL +sr ++
CP000661_2 432 ----------FADLVQIHQNANRAASLVGQLLAFSRKQTL 461

CP000661_1471: domain 1 of 1, from 505 to 576: score 47.1, E = 4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ +l eq+
CP000661_1 505 AWGDVARRIAHEIKNPLTPIQLSAERIKRKF-------RPLVGEQAG 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +y ++i+r+++ l+r+++++ ++r+ ++
CP000661_1 545 DL--------DQYADVIIRQTNDLRRIVDEFSKFARMPEP 576

CP000661_1909: domain 1 of 1, from 84 to 149: score 46.3, E = 6.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl+++sH+L +PL+a +++++ L e t + q
CP000661_1 84 SKTRFLRAASHDLLQPLSAAKLFLSHLSE---------TVSEPLQ-- 119

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i + ++ ++Li+ lL++sr+++
CP000661_1 120 ----------VDLVTRIATAFDSTEELIRALLEISRLDSV 149

CP000661_0242: domain 1 of 1, from 434 to 504: score 43.9, E = 3.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI ya + + l+ + +++ +
CP000661_0 434 TLGEMASTLAHELNQPLAAIASYAAGAAN-----LLAQGRADPVLL- 474

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+++ ++a+r ++i+++ dl r +++
CP000661_0 475 ----------SSALSKLSHQADRAGQIIRRIQDLVRKREP 504

CP000661_0708: domain 1 of 1, from 380 to 448: score 43.1, E = 5.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a++sHEL++PL+a+++y+ ++ l ++ee
CP000661_0 380 ALGEMSAAVSHELNQPLAAMKTYLAGAKLLLQ------RRRTEEA-- 418

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i++ +er+ ++ ++l ++r + +
CP000661_0 419 ----------LASFQRIDDLIERMGAITRQLKSYARKGGE 448

CP000661_2931: domain 1 of 1, from 211 to 277: score 40.0, E = 4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +a+++HEL TPL++I++ ++ L e els++ l
CP000661_2 211 DLGGVVAAAAHELGTPLATIKLVSSELAE----------ELSDQPSL 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e i+ +a+r++++++ + + + +
CP000661_2 248 ----------RDDAELIRAQADRCRDILRSMGRAGKDDLQ 277

CP000661_2399: domain 1 of 1, from 284 to 348: score 38.6, E = 1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++l+H+L++ L+aI g a l+++ l++ +
CP000661_2 284 IIGQLASGLAHDLNNLLAAIGGSATLIRD-----------LGPGAA- 318

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++il+++e+ +L++++L l + +++
CP000661_2 319 ----------EAHAQRILSATEQAGALVRRFLSLGQRQSN 348

CP000661_0073: domain 1 of 1, from 244 to 308: score 37.2, E = 2.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a +sH+LR+ Lt+ +++a+ L ++
CP000661_0 244 QLGGAVAKISHDLRNILTTAQLFADRLSS----------SDDPAV-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++l +++r +L + L++ r+e++
CP000661_0 279 ----------ARAAPKLLGSIRRAVSLCEATLTFGRAEEP 308


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 5 0|=
-13 36 2|*===
-12 97 71|======*==
-11 257 368|======================== *
-10 476 684|============================================ *
-9 617 706|========================================================= *
-8 591 528|===============================================*======
-7 407 333|==============================*======
-6 244 191|=================*=====
-5 165 105|=========*=====
-4 90 56|=====*===
-3 44 29|==*=
-2 22 15|=*
-1 23 8|*==
0 5 4|*
1 0 2|*
2 5 1|*
3 3 0|=
4 1 0|=
5 0 0|
> 6 23 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 246.1939
P(chi-square) = 0

Total sequences searched: 3111

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: