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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

6 accessions found for Rhodobacter sphaeroides ATCC 17025  

Data for CP000661  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000661.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000661_2675 CDS_2740217-2738439 96.4 2.4e-27 1
CP000661_1330 CDS_1377786-1378838 89.9 1.7e-25 1
CP000661_0583 CDS_591290-589638 83.3 1.2e-23 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000661_2675 1/1 375 459 .. 1 94 [] 96.4 2.4e-27
CP000661_1330 1/1 155 238 .. 1 94 [] 89.9 1.7e-25
CP000661_0583 1/1 353 434 .. 1 94 [] 83.3 1.2e-23

Alignments of top-scoring domains:
CP000661_2675: domain 1 of 1, from 375 to 459: score 96.4, E = 2.4e-27
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ+I+S+ ++Q r+++ +e+ + +++ q+RV+S
CP000661_2 375 EVHHRVKNNLQLIASIMNMQMRQARTPEA-----KGLMKGLQDRVMS 416

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
A+iH+ LY++ +l ++ +e l+ ++++ +++++ + +i +
CP000661_2 417 LATIHRGLYQTTGLTDIRADELLSDIVRQVVNLATGPGRRIA----V 459

CP000661_1330: domain 1 of 1, from 155 to 238: score 89.9, E = 1.7e-25
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRV N+L+++ SLLrLQa+ + + ev + aL E+q+R+ +
CP000661_1 155 EVHHRVANSLAMVQSLLRLQAQASGSDEV-----KTALAEAQGRIGA 196

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A +H+ LY + + +v+++ Yl+ ++++ + g + L+ +
CP000661_1 197 VAAVHRSLYLGNEGRQVELGTYLRTMLDDFTATLPPGVQ---LD--V 238

CP000661_0583: domain 1 of 1, from 353 to 434: score 83.3, E = 1.2e-23
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ+ISSL+ LQ r +++++ +e + q+ + +
CP000661_0 353 EVHHRVKNNLQLISSLVALQRRGVTEPAM-----RERMVRIQGQIGA 394

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A +++ L++ + ++vdf++++ L+e + +s g++++ +
CP000661_0 395 IARTYDLLHRLGASEQVDFGPFVPALCEAIEESEGGRAQ-------V 434


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-15 5 0|=
-14 12 0|=
-13 45 19|=*=
-12 198 204|============*
-11 918 568|===================================*======================
-10 684 736|=========================================== *
-9 431 621|=========================== *
-8 362 417|======================= *
-7 163 247|=========== *
-6 162 138|========*==
-5 52 74|====*
-4 32 39|==*
-3 22 20|=*
-2 8 10|*
-1 6 5|*
0 4 2|*
1 0 1|*
2 2 0|=
3 0 0|
> 4 5 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 359.4401
P(chi-square) = 0

Total sequences searched: 3111

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: