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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

6 accessions found for Rhodobacter sphaeroides ATCC 17025  

Data for CP000662  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000662.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000662_0087 CDS_92077-89987 76.7 4.1e-22 1
CP000662_0526 CDS_574078-575445 61.1 1.1e-17 1
CP000662_0237 CDS_258898-257579 51.9 4.4e-15 1
CP000662_0801 CDS_877196-875796 48.7 3.6e-14 1
CP000662_0618 CDS_681344-682426 41.9 3.2e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000662_0087 1/1 465 533 .. 1 87 [] 76.7 4.1e-22
CP000662_0526 1/1 230 295 .. 1 87 [] 61.1 1.1e-17
CP000662_0237 1/1 192 287 .. 1 87 [] 51.9 4.4e-15
CP000662_0801 1/1 246 312 .. 1 87 [] 48.7 3.6e-14
CP000662_0618 1/1 136 200 .. 1 87 [] 41.9 3.2e-12

Alignments of top-scoring domains:
CP000662_0087: domain 1 of 1, from 465 to 533: score 76.7, E = 4.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl+++sHELRTPLtaI+gyaelL++ +++ + e +r
CP000662_0 465 AKSNFLSAMSHELRTPLTAIIGYAELLEA-------SEGRKLEGER- 503

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i +++ +l +L++ +L+lsr+++
CP000662_0 504 ----------MNHVRAISSSGWSLVKLVDAVLELSRLDHK 533

CP000662_0526: domain 1 of 1, from 230 to 295: score 61.1, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a+++HEL+TPL+++++ ae++++ + +e +r
CP000662_0 230 HEQDFTAYAAHELKTPLAGLKMQAEVAQR----------APDEATR- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l i+++++r +rL+++lLd++ ++g
CP000662_0 266 ----------THALAQIRSAVDRSDRLVRQLLDMAAVDQG 295

CP000662_0237: domain 1 of 1, from 192 to 287: score 51.9, E = 4.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldk..v.lagdtelsee
+++++la+++HEL++P++ + ++a++L++++ k + +++ ++
CP000662_0 192 SLGRLLAGVAHELNNPISFVYANAHALERYAGKfeSyFHEVQAGATR 238

qrlpeLR..l....edpeyreyletilreaerllrLindlLdlsrieag<
+ l +LR++l+ ++e+++ re+++ +++ aer +++++dl+ ls ++g
CP000662_0 239 EDLMRLRedLkldrEVRNLREAVRGAREGAERVRDIVEDLRRLSSDGSG 287

-*

CP000662_0 - -

CP000662_0801: domain 1 of 1, from 246 to 312: score 48.7, E = 3.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ ++++H+LRTP+t +r +e L +++l+e+
CP000662_0 246 SLRQVSSDVAHDLRTPITRLRSSLEPLML--------REDLPEDA-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +a+r+ r+ n +L +++ie g
CP000662_0 283 ----------AAEVALAVGQADRIVRIFNAVLRIAQIEGG 312

CP000662_0618: domain 1 of 1, from 136 to 200: score 41.9, E = 3.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++++HELRTPLt +rg ++ Ll+ + +
CP000662_0 136 ELAYSNSAIAHELRTPLTILRGRLQGLLD---------GVFEPGP-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++ ++ l+ ++++l++l+ ag
CP000662_0 172 -----------QFYRRLIAHVDDLSGIVEELRTLALSNAG 200


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 1 0|=
-14 0 0|
-13 11 0|===
-12 23 18|====*=
-11 72 95|================== *
-10 115 176|============================= *
-9 178 182|=============================================*
-8 145 136|=================================*===
-7 96 85|=====================*==
-6 53 49|============*=
-5 54 27|======*=======
-4 15 14|===*
-3 13 7|=*==
-2 7 4|*=
-1 4 2|*
0 3 1|*
1 2 0|=
2 3 0|=
3 1 0|=
> 4 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 60.5378
P(chi-square) = 1.056e-09

Total sequences searched: 802

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: