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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

6 accessions found for Rhodobacter sphaeroides ATCC 17025  

Data for CP000662  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000662.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000662_0104 CDS_109525-110595 49.2 1.6e-14 1
CP000662_0075 CDS_77321-75699 37.2 4.2e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000662_0104 1/1 151 233 .. 1 94 [] 49.2 1.6e-14
CP000662_0075 1/1 336 402 .. 1 76 [. 37.2 4.2e-11

Alignments of top-scoring domains:
CP000662_0104: domain 1 of 1, from 151 to 233: score 49.2, E = 1.6e-14
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HRV NN + +LLrLQ r+ d+ + ++aL +++ R
CP000662_0 151 ELQHRVSNNISTLGALLRLQERRLIDPRA-----RAALADARARLEV 192

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A ++++L+ +vd++eY++ L+++ ++++ g is +
CP000662_0 193 VARLQRRLHDPAR-QSVDIGEYIRGLAADTIEAMDAGTR-IS----C 233

CP000662_0075: domain 1 of 1, from 336 to 402: score 37.2, E = 4.2e-11
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E HRVKNNL+++ +L++ Q r e E ++R+++
CP000662_0 336 ELSHRVKNNLALVLALIDRQIRTRGRIEP---------AELRGRIMA 373

mAliHEeLYksedldtvdfseYlekLten<-*
+A +H +L +d ++df+ +++L ++
CP000662_0 374 IAEVHSMLFAAGDRYDLDFGRLIDRLSSS 402


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 3 0|=
-14 3 0|=
-13 11 5|=*=
-12 54 52|============*=
-11 206 146|====================================*===============
-10 188 189|===============================================*
-9 121 160|=============================== *
-8 98 107|========================= *
-7 50 63|============= *
-6 30 35|========*
-5 13 19|====*
-4 5 10|==*
-3 7 5|=*
-2 3 2|*
-1 0 1|*
0 3 0|=
1 1 0|=
2 0 0|
3 1 0|=
4 0 0|
5 1 0|=
6 0 0|
> 7 4 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 50.6617
P(chi-square) = 2.016e-07

Total sequences searched: 802

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: