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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Salinispora tropica CNB-440  

Data for CP000667  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000667.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000667_3631 CDS_4227143-4225584 87.2 2.5e-24 1
CP000667_2097 CDS_2408231-2409682 85.1 9.9e-24 1
CP000667_4048 CDS_4665976-4662437 80.5 2e-22 1
CP000667_1181 CDS_1349143-1348112 75.9 4e-21 1
CP000667_4419 CDS_5068607-5067159 73.6 1.9e-20 1
CP000667_0959 CDS_1084847-1086520 65.0 4.9e-18 1
CP000667_1478 CDS_1708990-1710159 61.5 5e-17 1
CP000667_0336 CDS_388340-389572 59.3 2e-16 1
CP000667_1399 CDS_1595570-1594158 59.3 2e-16 1
CP000667_4457 CDS_5103912-5105369 55.2 3e-15 1
CP000667_2528 CDS_2891727-2890375 52.0 2.4e-14 1
CP000667_1576 CDS_1814633-1816078 51.6 3e-14 1
CP000667_1675 CDS_1939671-1941080 47.9 3.5e-13 1
CP000667_0617 CDS_705438-704329 44.3 3.7e-12 1
CP000667_2840 CDS_3304655-3303267 34.0 3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000667_3631 1/1 284 351 .. 1 87 [] 87.2 2.5e-24
CP000667_2097 1/1 259 326 .. 1 87 [] 85.1 9.9e-24
CP000667_4048 1/1 767 835 .. 1 87 [] 80.5 2e-22
CP000667_1181 1/1 112 179 .. 1 87 [] 75.9 4e-21
CP000667_4419 1/1 247 313 .. 1 87 [] 73.6 1.9e-20
CP000667_0959 1/1 280 347 .. 1 87 [] 65.0 4.9e-18
CP000667_1478 1/1 157 224 .. 1 87 [] 61.5 5e-17
CP000667_0336 1/1 153 230 .. 1 87 [] 59.3 2e-16
CP000667_1399 1/1 249 316 .. 1 87 [] 59.3 2e-16
CP000667_4457 1/1 264 331 .. 1 87 [] 55.2 3e-15
CP000667_2528 1/1 233 300 .. 1 87 [] 52.0 2.4e-14
CP000667_1576 1/1 262 327 .. 1 87 [] 51.6 3e-14
CP000667_1675 1/1 232 297 .. 1 87 [] 47.9 3.5e-13
CP000667_0617 1/1 144 208 .. 1 87 [] 44.3 3.7e-12
CP000667_2840 1/1 251 318 .. 1 87 [] 34.0 3e-09

Alignments of top-scoring domains:
CP000667_3631: domain 1 of 1, from 284 to 351: score 87.2, E = 2.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt+Irg+ael + ++ ++s+eq+
CP000667_3 284 RMRQFVADASHELRTPLTTIRGFAELYRQGA--------ARSPEQT- 321

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i++ea r+ L++dlL l+r++ +
CP000667_3 322 ----------GDLLRRIEDEAARMGLLVEDLLLLARLDRE 351

CP000667_2097: domain 1 of 1, from 259 to 326: score 85.1, E = 9.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPL+aIrgyae++++ g+ +++
CP000667_2 259 RVRQFVADASHELRTPLAAIRGYAEVARR-------GRNQVPPDV-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++++e+ r+ L++dlL l+r+++g
CP000667_2 297 ----------AHALRRVESESTRMTGLVEDLLLLARLDSG 326

CP000667_4048: domain 1 of 1, from 767 to 835: score 80.5, E = 2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++++a lL +++ls++q+
CP000667_4 767 YKSEFLANMSHELRTPLNSLLLLARLLVQ------NPEQNLSPKQI- 806

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti++++ ll+Li+d+Ldls+ieag
CP000667_4 807 -----------EFARTIHNAGTDLLSLIDDILDLSKIEAG 835

CP000667_1181: domain 1 of 1, from 112 to 179: score 75.9, E = 4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a +sH+LRTPL+++r++ae+L++++ + ++
CP000667_1 112 GRRDLVAWVSHDLRTPLAGLRAMAEALEDRV-------VDDPATV-- 149

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey ++i+ e++r+ rL++dl +lsri ag
CP000667_1 150 ----------SEYHHRIRVETDRMTRLVDDLFELSRINAG 179

CP000667_4419: domain 1 of 1, from 247 to 313: score 73.6, E = 1.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++efl ++sHELRTPLtaIrgyae+L + + ++ ++
CP000667_4 247 RQREFLLSVSHELRTPLTAIRGYAEALAD---------GVIDSAEV- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+t+l eae+l+rL++dlL l+r+ea
CP000667_4 284 ----------TGTGRTVLAEAEHLDRLVRDLLALARLEAV 313

CP000667_0959: domain 1 of 1, from 280 to 347: score 65.0, E = 4.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+l+ + +++ ++
CP000667_0 280 LQRRFTSDVSHELRTPLTTVRMAADLIFA-------ERDGFDPAV-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e ++ e++r ++L+ dlL+ sr +ag
CP000667_0 318 ----------ARSAELLQTELDRFEELLTDLLEVSRFDAG 347

CP000667_1478: domain 1 of 1, from 157 to 224: score 61.5, E = 5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+an+sHELRTPL+++r+ +++ l d+e++ +
CP000667_1 157 AQKRFVANASHELRTPLAVMRTEIDVTLS--------DDEADTAE-- 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++ ++++++er + L++ lL l+r ea+
CP000667_1 194 ---------YRRMSTVVRDASERANGLVDALLVLARSEAQ 224

CP000667_0336: domain 1 of 1, from 153 to 230: score 59.3, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a++++ae+Ll+ te +e+++
CP000667_0 153 VRRDFVANVSHELKTPIGALQLLAEALLD--------ATEPADEEQP 191

peLR....ledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ e+i++e+ rl rL+++lL+l+r++
CP000667_0 192 DLSEdlvaT-----RRFAERIRHESTRLGRLVQELLELTRLQGA 230

CP000667_1399: domain 1 of 1, from 249 to 316: score 59.3, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a++sHELRTPL+a+ g a+l l+++ t+++ +
CP000667_1 249 LTRTFVADASHELRTPLSAVHGWADLYLNDGI------TDWDGVD-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++i+ e+ r+ L+++lL+l+r++a
CP000667_1 288 -----------EAMRRIRTETTRMGTLVEQLLTLARLDAH 316

CP000667_4457: domain 1 of 1, from 264 to 331: score 55.2, E = 3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a sHELRTP+t+I+gya++L + ++++l++ +r
CP000667_4 264 DHDLFVAVTSHELRTPVTVIKGYADTLTD-------HWEALTDADR- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++i + a+ l rL+++ L s +eag
CP000667_4 303 ----------QLAARKIGQRANELARLVDR-LLSSTAEAG 331

CP000667_2528: domain 1 of 1, from 233 to 300: score 52.0, E = 2.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELR PL ++ +++++L + e +e +
CP000667_2 233 RDRRFAADVSHELRSPLQTLYAATSVLTS--------RREHHDERT- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +e+ r ++L+ndlL+l+r +++
CP000667_2 271 ----------ATAAGLVADEIGRFQQLVNDLLELARTDQP 300

CP000667_1576: domain 1 of 1, from 262 to 327: score 51.6, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELR PLt +r+ +e++++ l+ +t++++
CP000667_1 262 RERAFVADAAHELRSPLTNLRTELEVAQR-----LGDRTDWGAIS-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++erl rL++dlL l+r+++
CP000667_1 302 --------------VDLLADTERLGRLVDDLLLLARLDEA 327

CP000667_1675: domain 1 of 1, from 232 to 297: score 47.9, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sH+LR+PLta+r+ +e L l+++q
CP000667_1 232 RQRAFVAHASHQLRNPLTALRLRVEELGP----------SLGDPQG- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +l e++rl ++ lL+l+r+e
CP000667_1 268 ----------QAEHQLALAETDRLALVLDALLTLARAERT 297

CP000667_0617: domain 1 of 1, from 144 to 208: score 44.3, E = 3.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la+l HELRTPL++I +y+e++++++ + ++e++
CP000667_0 144 TRRRLLADLGHELRTPLATIEAYLEAAEDGV--------AVDDEDL- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++rl rL +d+ sr+e+
CP000667_0 182 -------------QSVLRAQTDRLHRLADDIAAVSRAETH 208

CP000667_2840: domain 1 of 1, from 251 to 318: score 34.0, E = 3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ + HELRTPLt++r+++ lL + +el+ r
CP000667_2 251 AQQRLVQEAGHELRTPLTSMRTNIALLHR--------FDELPLSAR- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l + e++ l +Lin+l +l+ +
CP000667_2 289 ----------GPLLTDLTMESRELIKLINELVELATDTRE 318


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-14 2 0|=
-13 37 3|*==
-12 172 103|======*====
-11 439 537|============================ *
-10 745 997|=============================================== *
-9 912 1030|========================================================= *
-8 834 771|================================================*====
-7 563 486|==============================*=====
-6 366 279|=================*=====
-5 212 153|=========*====
-4 120 82|=====*==
-3 53 43|==*=
-2 33 22|=*=
-1 8 11|*
0 13 6|*
1 2 3|*
2 4 1|*
3 2 0|=
4 1 0|=
> 5 18 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 239.7677
P(chi-square) = 3.448e-314

Total sequences searched: 4536

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: