Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Salinispora tropica CNB-440  

Data for CP000667  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000667.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000667_3652 CDS_4251026-4249476 115.0 1.8e-32 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000667_3652 1/1 310 392 .. 1 94 [] 115.0 1.8e-32

Alignments of top-scoring domains:
CP000667_3652: domain 1 of 1, from 310 to 392: score 115.0, E = 1.8e-32
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar++ +e+ + aL+Es++RV+S
CP000667_3 310 EIHHRVKNNLQTVAALLRLQARRVAMPEA-----RIALEESVRRVAS 351

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+HE L++s d + v+f+ ++++++ + ++ +s ++ +
CP000667_3 352 IALVHETLSMSND-EVVEFDGIVDRVASAATEVAATEST---VR--M 392


Histogram of all scores:
score obs exp (one = represents 23 sequences)
----- --- ---
-15 2 0|=
-14 19 0|=
-13 81 28|=*==
-12 343 297|============*==
-11 1354 829|====================================*======================
-10 1042 1073|==============================================*
-9 693 906|=============================== *
-8 490 608|====================== *
-7 206 361|========= *
-6 173 201|========*
-5 63 108|=== *
-4 31 57|==*
-3 21 30|=*
-2 4 15|*
-1 5 8|*
0 4 4|*
1 2 2|*
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 615.8797
P(chi-square) = 0

Total sequences searched: 4536

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: