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Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Yersinia pestis Pestoides F  

Data for CP000668  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000668.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000668_2773 CDS_3214770-3213451 88.2 1.1e-24 1
CP000668_3639 CDS_4264901-4267720 86.8 2.8e-24 1
CP000668_2911 CDS_3383547-3380755 85.9 4.9e-24 1
CP000668_2422 CDS_2818441-2815661 79.3 3.6e-22 1
CP000668_0335 CDS_384068-386404 75.7 4e-21 1
CP000668_1095 CDS_1259687-1261072 69.5 2.2e-19 1
CP000668_2209 CDS_2561097-2559661 68.8 3.5e-19 1
CP000668_2068 CDS_2386506-2388050 67.1 1.1e-18 1
CP000668_2151 CDS_2488563-2489948 67.0 1.2e-18 1
CP000668_1170 CDS_1352820-1356821 65.8 2.5e-18 1
CP000668_3750 CDS_4400502-4401878 63.6 1e-17 1
CP000668_3798 CDS_4451188-4452267 62.4 2.3e-17 1
CP000668_0604 CDS_699603-701021 58.1 3.9e-16 1
CP000668_2058 CDS_2373821-2372472 53.9 5.7e-15 1
CP000668_0063 CDS_77902-79254 53.2 9.3e-15 1
CP000668_3481 CDS_4089674-4090741 46.9 5.8e-13 1
CP000668_0814 CDS_947365-946088 36.2 5.9e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000668_2773 1/1 204 270 .. 1 87 [] 88.2 1.1e-24
CP000668_3639 1/1 397 462 .. 1 87 [] 86.8 2.8e-24
CP000668_2911 1/1 291 356 .. 1 87 [] 85.9 4.9e-24
CP000668_2422 1/1 448 513 .. 1 87 [] 79.3 3.6e-22
CP000668_0335 1/1 282 347 .. 1 87 [] 75.7 4e-21
CP000668_1095 1/1 238 304 .. 1 87 [] 69.5 2.2e-19
CP000668_2209 1/1 252 320 .. 1 87 [] 68.8 3.5e-19
CP000668_2068 1/1 280 350 .. 1 87 [] 67.1 1.1e-18
CP000668_2151 1/1 237 301 .. 1 87 [] 67.0 1.2e-18
CP000668_1170 1/1 739 803 .. 1 87 [] 65.8 2.5e-18
CP000668_3750 1/1 238 300 .. 1 87 [] 63.6 1e-17
CP000668_3798 1/1 139 204 .. 1 87 [] 62.4 2.3e-17
CP000668_0604 1/1 255 320 .. 1 87 [] 58.1 3.9e-16
CP000668_2058 1/1 228 291 .. 1 87 [] 53.9 5.7e-15
CP000668_0063 1/1 233 293 .. 1 87 [] 53.2 9.3e-15
CP000668_3481 1/1 136 196 .. 1 87 [] 46.9 5.8e-13
CP000668_0814 1/1 202 262 .. 1 87 [] 36.2 5.9e-10

Alignments of top-scoring domains:
CP000668_2773: domain 1 of 1, from 204 to 270: score 88.2, E = 1.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + +el + r
CP000668_2 204 ARRNFFANVSHELRTPLTVLQGYLEMMHD---------QELAGPLR- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l t++++++r++ L+ +lL+lsriea
CP000668_2 241 ----------DKALGTMQEQTKRMDGLVKQLLTLSRIEAA 270

CP000668_3639: domain 1 of 1, from 397 to 462: score 86.8, E = 2.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+ l ++sHE+RTPL++ +g++elL++ t+l++ q
CP000668_3 397 RKSDHLTTISHEIRTPLNGALGAVELLQN---------TPLDAGQ-- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ et+++++ +ll++in+lLd+srie+g
CP000668_3 433 ----------MRLAETAHQCSLSLLAIINNLLDFSRIESG 462

CP000668_2911: domain 1 of 1, from 291 to 356: score 85.9, E = 4.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t l++ q
CP000668_2 291 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TSLTPTQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+r+a+ ll +ind+Ld+s++ea
CP000668_2 327 ----------TDYLQTIQRSANNLLCIINDVLDFSKLEAD 356

CP000668_2422: domain 1 of 1, from 448 to 513: score 79.3, E = 3.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CP000668_2 448 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPQGV-- 483

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CP000668_2 484 ----------DRLVTAMNNSSGLLLKIISDILDFSKIESE 513

CP000668_0335: domain 1 of 1, from 282 to 347: score 75.7, E = 4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel++eq
CP000668_0 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELDAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
CP000668_0 318 ----------LKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

CP000668_1095: domain 1 of 1, from 238 to 304: score 69.5, E = 2.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPLt ++g ++l l ++ ++
CP000668_1 238 QLESFNADVAHELRTPLTNLMGQTQLGLS---------RKRETHEL- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le+ l+e+er+ +++nd+L ls ++ag
CP000668_1 275 ----------EDLLESNLEELERMTSIVNDMLFLSHAQAG 304

CP000668_2209: domain 1 of 1, from 252 to 320: score 68.8, E = 3.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+ +q
CP000668_2 252 QRHEFLRHISHELKTPLASMREGTELLADEVA------GPLTQDQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++++l++Li++lLd+ r a
CP000668_2 291 ----------QEVVAILDHSSRHLQQLIEQLLDYNRKLAD 320

CP000668_2068: domain 1 of 1, from 280 to 350: score 67.1, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ +sHEL+TPLt I +yae+L+e l+ ++ ++
CP000668_2 280 QQVSFVGQVSHELKTPLTNITLYAEMLQE-----LQPEQSVPPTAE- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle+il+e++rl+rLi+++L ++++
CP000668_2 321 ----------QRYLEVILNESQRLSRLIQNILSFTKAPKL 350

CP000668_2151: domain 1 of 1, from 237 to 301: score 67.0, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e+L+++l ++e
CP000668_2 237 MRRDFMADVSHELRTPLAVLRGELEALQDGL-------RQPTPES-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++ e+ l +L+ndl +ls+ + g
CP000668_2 275 -------------LSSLQAEVAILTKLVNDLHQLSQSDRG 301

CP000668_1170: domain 1 of 1, from 739 to 803: score 65.8, E = 2.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sHELRTP+ aI+g++el + ++++ e+
CP000668_1 739 TKSTFLATISHELRTPMYAIMGLLELEIR---------SNRPVEK-- 774

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l t+ ++a++l L++d+ d ++ieag
CP000668_1 775 -----------DTLVTVSKSAQSLMLLLDDIIDSAKIEAG 803

CP000668_3750: domain 1 of 1, from 238 to 300: score 63.6, E = 1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++++++sHELRTPLt +++++ l+++ + ++
CP000668_3 238 AQQRLISDISHELRTPLTRLQLATALMRR---------RHGEGKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL lsr ++
CP000668_3 274 -------------LERIEMEAQRLDSMINDLLVLSRSQHK 300

CP000668_3798: domain 1 of 1, from 139 to 204: score 62.4, E = 2.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP000668_3 139 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPAL- 174

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL r ++
CP000668_3 175 ----------LEYTQVIIEQADRLRNLVDRLLGPQRPGQH 204

CP000668_0604: domain 1 of 1, from 255 to 320: score 58.1, E = 3.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aI+g+aelL+e ++ +e
CP000668_0 255 YIEQYVHTLTHELKSPLAAISGAAELLRE---------SPPPETA-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i++++ r+++L++ +L +r+e+
CP000668_0 291 ----------QRFLINIEQQSARIQQLVDKMLVQARLESR 320

CP000668_2058: domain 1 of 1, from 228 to 291: score 53.9, E = 5.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l ++++++ +
CP000668_2 228 AREQLLHDVSHELRSPLARLQLAIGL------------AHQNPDNV- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i++e+erl+++i +lL lsr+e+
CP000668_2 262 ----------DNALQRIEHESERLDKMIGELLALSRAENH 291

CP000668_0063: domain 1 of 1, from 233 to 293: score 53.2, E = 9.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
CP000668_0 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE--------------DD-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i +++e ++++i+++ d+ r +++
CP000668_0 264 ----------AYLSESINKDIEECNAIIEQFIDYLRTGQE 293

CP000668_3481: domain 1 of 1, from 136 to 196: score 46.9, E = 5.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL++Ir+++el+++ + e +
CP000668_3 136 QERLFTADAAHELRTPLAGIRLHLELMEK---------QGIAESK-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++ l + i++lL lsr++++
CP000668_3 172 ---------------SLINRIDLLMHTIEQLLMLSRAGQN 196

CP000668_0814: domain 1 of 1, from 202 to 262: score 36.2, E = 5.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ++ +++HELRTPL +r + + + l+e ++
CP000668_0 202 SKKLLIDGIAHELRTPLVRLRYRLAMSDN-----------LTESEQ- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ +l++Li++lL+++r++ +
CP000668_0 237 --------------QALHHDIGQLEALIDELLTYARLDRP 262


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-15 3 0|=
-14 19 0|==
-13 47 2|*===
-12 179 87|=======*=======
-11 352 456|============================== *
-10 632 846|===================================================== *
-9 699 874|==========================================================*
-8 700 654|======================================================*====
-7 486 412|==================================*======
-6 301 237|===================*======
-5 185 130|==========*=====
-4 105 69|=====*===
-3 51 36|==*==
-2 27 19|=*=
-1 25 10|*==
0 6 5|*
1 5 2|*
2 3 1|*
3 1 0|=
4 3 0|=
5 0 0|
6 1 0|=
> 7 20 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 312.3289
P(chi-square) = 0

Total sequences searched: 3850

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: