Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Haemophilus influenzae PittEE  

Data for CP000671  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000671.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000671_0783 CDS_934593-933316 70.8 4.1e-20 1
CP000671_0617 CDS_708975-710330 46.3 3.4e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000671_0783 1/1 194 260 .. 1 87 [] 70.8 4.1e-20
CP000671_0617 1/1 234 300 .. 1 87 [] 46.3 3.4e-13

Alignments of top-scoring domains:
CP000671_0783: domain 1 of 1, from 194 to 260: score 70.8, E = 4.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fl+n+ HELRTPLt+++gy+e+L ++ +++ q
CP000671_0 194 SRQKFLSNINHELRTPLTVLQGYLEILADN--------NIQNPLQ-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++++++r+++L++++ l++ie+
CP000671_0 231 ----------KKAIFAMQEQSQRMEHLLQQFNFLAKIETT 260

CP000671_0617: domain 1 of 1, from 234 to 300: score 46.3, E = 3.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a+r +e+++ + + r
CP000671_0 234 RERRFTSDAAHELRSPLAALRIQTEVAQL---------AGDDVALR- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + + ++r ++Li++lL+lsr+++
CP000671_0 271 ----------EQALLHLTQGIDRASQLIEQLLTLSRLDNL 300


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 2 0|=
-14 15 0|===
-13 28 1|*====
-12 85 37|======*========
-11 169 192|============================= *
-10 313 356|===================================================== *
-9 292 368|================================================= *
-8 266 275|=============================================*
-7 166 173|============================*
-6 138 100|================*======
-5 51 54|========*
-4 45 29|====*===
-3 23 15|==*=
-2 11 8|=*
-1 7 4|*=
0 1 2|*
1 5 1|*
2 1 0|=
3 2 0|=
4 0 0|
5 0 0|
> 6 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 114.2920
P(chi-square) = 7.252e-20

Total sequences searched: 1623

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: