Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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3 accessions found for   

Data for CP000677  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000677.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000677_0093 CDS_96177-101525 86.0 5.2e-25 1
CP000677_0382 CDS_425598-423472 51.0 4.3e-15 1
CP000677_0383 CDS_425714-427204 42.6 1.1e-12 1
CP000677_0094 CDS_101629-103527 37.2 3.6e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000677_0093 1/1 1227 1295 .. 1 87 [] 86.0 5.2e-25
CP000677_0382 1/1 476 544 .. 1 87 [] 51.0 4.3e-15
CP000677_0383 1/1 275 341 .. 1 87 [] 42.6 1.1e-12
CP000677_0094 1/1 279 345 .. 1 87 [] 37.2 3.6e-11

Alignments of top-scoring domains:
CP000677_0093: domain 1 of 1, from 1227 to 1295: score 86.0, E = 5.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++ +++lL +++ ++l+e+q
CP000677_0 1227 YKSEFLANMSHELRTPLNSLLILSKLLADNQQ------GNLNEKQ-- 1265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti+ ++ ll+Lind+Ldls+ie+g
CP000677_0 1266 ----------TEFARTIHGAGTDLLNLINDILDLSKIESG 1295

CP000677_0382: domain 1 of 1, from 476 to 544: score 51.0, E = 4.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ lsHE+RTPLt+I ++L++++ t l++e +
CP000677_0 476 GQRRFINILSHEFRTPLTVIDSCGQILRRRA-------TRLTAEAT- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + i+r+a r+++ + L+l r+e g
CP000677_0 515 ----------VERADMIRRAAARIREVMESALQLVRMEDG 544

CP000677_0383: domain 1 of 1, from 275 to 341: score 42.6, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fl+ sH++RTPLt+I g+a +++ + + +
CP000677_0 275 TQRQFLSVTSHDFRTPLTVIDGAARRIER---------LADPGSPV- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++i++ a+r+ + +++ L + i g
CP000677_0 312 ----------FERAKVIRETARRMTEAVDRTLGWASIADG 341

CP000677_0094: domain 1 of 1, from 279 to 345: score 37.2, E = 3.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L+a++g + lL++ ++l++
CP000677_0 279 ALGRLTGGVAHDFNNVLAAVLGGITLLER--------KAPLDDLG-- 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e i+ +aer +L+++++ ++r ++
CP000677_0 316 ----------HRLTEQIRLAAERGAELVRRMMAFARKQEL 345


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 1 0|=
-12 14 9|====*==
-11 27 51|============== *
-10 79 94|======================================== *
-9 83 97|========================================== *
-8 84 73|====================================*=====
-7 73 46|======================*==============
-6 32 26|============*===
-5 16 14|======*=
-4 9 7|===*=
-3 6 4|=*=
-2 0 2|*
-1 0 1|*
0 2 0|=
> 1 5 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 36.5600
P(chi-square) = 1.386e-05

Total sequences searched: 431

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: