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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Shewanella putrefaciens CN-32  

Data for CP000681  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000681.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000681_3118 CDS_3654177-3648862 103.8 4.3e-29 1
CP000681_3276 CDS_3848538-3844834 99.2 8.9e-28 1
CP000681_2750 CDS_3211878-3214679 92.5 7e-26 1
CP000681_1289 CDS_1461791-1463089 77.6 1.2e-21 1
CP000681_0299 CDS_326346-322756 68.7 3.8e-19 1
CP000681_0049 CDS_58391-57345 67.5 8.5e-19 1
CP000681_0256 CDS_274640-273165 60.7 7.2e-17 1
CP000681_3055 CDS_3576770-3574110 60.2 9.7e-17 1
CP000681_0368 CDS_405930-404884 59.6 1.5e-16 1
CP000681_3941 CDS_4622500-4623594 54.0 5.5e-15 1
CP000681_2564 CDS_3001010-2999928 53.3 9.1e-15 1
CP000681_2067 CDS_2386723-2385329 52.0 2.1e-14 1
CP000681_1002 CDS_1124756-1123488 50.7 5e-14 1
CP000681_0362 CDS_400476-399127 49.8 9e-14 1
CP000681_1726 CDS_1984321-1982162 48.9 1.6e-13 1
CP000681_3817 CDS_4463693-4465009 48.5 2.1e-13 1
CP000681_2333 CDS_2706642-2703205 46.6 7e-13 1
CP000681_2488 CDS_2907830-2909641 44.7 2.4e-12 1
CP000681_0838 CDS_937351-938646 43.8 4.5e-12 1
CP000681_3847 CDS_4502599-4500476 43.5 5.4e-12 1
CP000681_1967 CDS_2268233-2269627 43.1 7.1e-12 1
CP000681_3306 CDS_3880137-3877984 42.9 7.7e-12 1
CP000681_0394 CDS_431384-432640 31.9 1e-08 1
CP000681_0659 CDS_742175-744187 31.7 1.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000681_3118 1/1 1039 1104 .. 1 87 [] 103.8 4.3e-29
CP000681_3276 1/1 721 786 .. 1 87 [] 99.2 8.9e-28
CP000681_2750 1/1 298 363 .. 1 87 [] 92.5 7e-26
CP000681_1289 1/1 205 271 .. 1 87 [] 77.6 1.2e-21
CP000681_0299 1/1 706 772 .. 1 87 [] 68.7 3.8e-19
CP000681_0049 1/1 127 195 .. 1 87 [] 67.5 8.5e-19
CP000681_0256 1/1 262 328 .. 1 87 [] 60.7 7.2e-17
CP000681_3055 1/1 658 726 .. 1 87 [] 60.2 9.7e-17
CP000681_0368 1/1 126 191 .. 1 87 [] 59.6 1.5e-16
CP000681_3941 1/1 134 198 .. 1 87 [] 54.0 5.5e-15
CP000681_2564 1/1 136 202 .. 1 87 [] 53.3 9.1e-15
CP000681_2067 1/1 249 315 .. 1 87 [] 52.0 2.1e-14
CP000681_1002 1/1 200 269 .. 1 87 [] 50.7 5e-14
CP000681_0362 1/1 235 297 .. 1 87 [] 49.8 9e-14
CP000681_1726 1/1 498 563 .. 1 87 [] 48.9 1.6e-13
CP000681_3817 1/1 233 293 .. 1 87 [] 48.5 2.1e-13
CP000681_2333 1/1 783 849 .. 1 87 [] 46.6 7e-13
CP000681_2488 1/1 378 446 .. 1 87 [] 44.7 2.4e-12
CP000681_0838 1/1 214 279 .. 1 87 [] 43.8 4.5e-12
CP000681_3847 1/1 467 534 .. 1 87 [] 43.5 5.4e-12
CP000681_1967 1/1 245 310 .. 1 87 [] 43.1 7.1e-12
CP000681_3306 1/1 494 562 .. 1 87 [] 42.9 7.7e-12
CP000681_0394 1/1 208 272 .. 1 87 [] 31.9 1e-08
CP000681_0659 1/1 430 499 .. 1 87 [] 31.7 1.2e-08

Alignments of top-scoring domains:
CP000681_3118: domain 1 of 1, from 1039 to 1104: score 103.8, E = 4.3e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+++l+l t+l+ +q
CP000681_3 1039 AKGDFLANMSHEIRTPMNAIIGMSQLCLQ---------TALDKKQ-- 1074

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e+i+r++++ll++ind+Ld+s+ieag
CP000681_3 1075 ----------KNYVEKIERASQSLLSIINDILDFSKIEAG 1104

CP000681_3276: domain 1 of 1, from 721 to 786: score 99.2, E = 8.9e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
CP000681_3 721 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTPQQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++ +a++llr+ind+Ld+s+ieag
CP000681_3 757 ----------KDYLEKAGFSAQSLLRIINDILDFSKIEAG 786

CP000681_2750: domain 1 of 1, from 298 to 363: score 92.5, E = 7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a L + t+l + q
CP000681_2 298 IKSEFLANMSHELRTPLNGVIGFARQLVK---------TPLHSSQ-- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+r+a ll++ind+Ld+s++eag
CP000681_2 334 ----------VDYINTIERSATNLLAIINDILDFSKLEAG 363

CP000681_1289: domain 1 of 1, from 205 to 271: score 77.6, E = 1.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ + ++ +
CP000681_1 205 MRKEFVANVSHELKTPLTVLQGYLEMMQS---------MAEPDSMN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++++r+++++++lL lsrie
CP000681_1 242 ----------VKPLALMQQQTQRMQSMVEQLLVLSRIEDA 271

CP000681_0299: domain 1 of 1, from 706 to 772: score 68.7, E = 3.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHE+RTP++aI+g++el+ + +++ + +
CP000681_0 706 AKTQFLATMSHEIRTPMNAIIGLLELAIK--------RSHENQFD-- 742

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++++a+ ll+Li d+Ld+ +ieag
CP000681_0 743 ----------FNSIRVAHDSAKGLLALIGDILDIVKIEAG 772

CP000681_0049: domain 1 of 1, from 127 to 195: score 67.5, E = 8.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L+e++ ++ls+ q+
CP000681_0 127 LRNSILLSVSHDLRTPLATIIGTLTTLKEYM-------PKLSPSQK- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++++ e++rl + i++lL+ +++++g
CP000681_0 166 ----------DELIDSAAAESHRLHQYIENLLQATKLQHG 195

CP000681_0256: domain 1 of 1, from 262 to 328: score 60.7, E = 7.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f a+++HE+RTP+t + + +e++l ++++ +++
CP000681_0 262 RQANFSADIAHEIRTPITNLVTQTEIALS---------QDRTQKEL- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + l+e +r+ ++++d+L l++++++
CP000681_0 299 ----------EDVLYSSLEEYNRMTKMVSDMLFLAQADNN 328

CP000681_3055: domain 1 of 1, from 658 to 726: score 60.2, E = 9.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+L+ PL+a++g+ae L+ + + l ++
CP000681_3 658 LRSALLSSVSHDLKSPLSAMMGAAESLKL------LNKQLLEADR-- 696

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+til+e++rl++ i++lLd++r+++g
CP000681_3 697 ----------NELLDTILQESRRLDSYIQNLLDMTRLGHG 726

CP000681_0368: domain 1 of 1, from 126 to 191: score 59.6, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el+++ +
CP000681_0 126 AAQFLVRNLAHEIKNPLGGLRGAAQLLSR----------ELDDPAQ- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ i+++a+rl++L+++lL r +
CP000681_0 162 ----------KEFTTLIIEQADRLRNLVDRLLGPQRPTQH 191

CP000681_3941: domain 1 of 1, from 134 to 198: score 54.0, E = 5.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + a+++HELRTP+t +rg ++ L e + s+
CP000681_3 134 EREFWNAAIAHELRTPVTILRGRLQGLAE---------GVFSPSS-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e +lr++e l++Li+dl+ ls ++g
CP000681_3 170 -----------ELFEGLLRQVEGLNHLIEDLRVLSLNDSG 198

CP000681_2564: domain 1 of 1, from 136 to 202: score 53.3, E = 9.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya+ L ++ls+ +
CP000681_2 136 ALGKMVATLAHQVRTPLSAALLYASNLAS---------PKLSDSAK- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ + ++ l+r++nd+L +++ ++
CP000681_2 173 ----------TKFQQKLVDRLNELERQVNDMLLMAKGRQD 202

CP000681_2067: domain 1 of 1, from 249 to 315: score 52.0, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f a+++HEL+TPL++I+++ + L+ +++q+
CP000681_2 249 RERRFSADAAHELKTPLSVIKLHQHGLES---------LIGDDPQQ- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l i+ + ++++ +++lL l+r ++
CP000681_2 286 ----------RFHLAAIDAGVVHMSHTVEQLLVLARVDSI 315

CP000681_1002: domain 1 of 1, from 200 to 269: score 50.7, E = 5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l+ ++ ++ s+eq++
CP000681_1 200 NQKHLSNAVSHEIRTPLARLKFALALMPMYC-------QPDSDEQKR 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ +++ +++L+++lL+++ +e++
CP000681_1 240 ----------QDFLDEMQLDIKEMEDLLQELLTYASLESQ 269

CP000681_0362: domain 1 of 1, from 235 to 297: score 49.8, E = 9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPLt +++ + l+++ + ++ e+
CP000681_0 235 NQQRLMGDISHELRTPLTRLQLSLALARK--------KGQQTTET-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i eae+l++Li +lL+lsr +
CP000681_0 272 --------------DRIGYEAEQLEKLIAELLELSRVKLN 297

CP000681_1726: domain 1 of 1, from 498 to 563: score 48.9, E = 1.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L ++l+ +
CP000681_1 498 YLENMSSRLSHELRTPVAVVRSSLEHLNL---------QTLDQDA-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++++ + rl+ ++n++ + +r+e+
CP000681_1 534 ----------QKYVDRAQEGVSRLSMMLNNMSEATRLEQS 563

CP000681_3817: domain 1 of 1, from 233 to 293: score 48.5, E = 2.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e e+
CP000681_3 233 DRALLMAGISHDLRTPLTRIRLASEMMVE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e ++++i+++ + r +++
CP000681_3 264 ----------QYLKDGIVNDIEDMDAIISQFIAYIRQDQE 293

CP000681_2333: domain 1 of 1, from 783 to 849: score 46.6, E = 7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP000681_2 783 SKSRFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDREA-- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
CP000681_2 820 ----------RTTLSHVNSSLKIAGELLTDLLDISKLDSG 849

CP000681_2488: domain 1 of 1, from 378 to 446: score 44.7, E = 2.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HEL++PL+a+r ya+ +++l ++ ++
CP000681_2 378 VIGSLSASINHELNQPLAALRSYAQNTQTFLA------RDMQDKA-- 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i++ ++rl +++ ++ ++r +g
CP000681_2 417 ----------QDNLKIIIELTDRLADIVGQFKSFTRKSQG 446

CP000681_0838: domain 1 of 1, from 214 to 279: score 43.8, E = 4.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++sH+L+TP++ +r+ + +L+e ++se+ r
CP000681_0 214 DNKLLSRAVSHDLKTPIARLRFGIAALEE----------TQSEQLR- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++++ r+++ +++L+ lL ++r+++
CP000681_0 250 ----------VKYFQRLNRDLDTMEDLVMTLLSYARLDEA 279

CP000681_3847: domain 1 of 1, from 467 to 534: score 43.5, E = 5.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ el++ el ++ +
CP000681_3 467 ALGELTAGIAHEINNPTAVILGNMELMRYEL-------GDNADLV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +++++ r++ +i+ lL++sr ++
CP000681_3 505 ----------KEEIDLVIQQVMRISTIIRSLLQYSRPGEF 534

CP000681_1967: domain 1 of 1, from 245 to 310: score 43.1, E = 7.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+f+a++sHELRTPL+ ++++++ L e ++ +++
CP000681_1 245 KEKRFIADASHELRTPLSILQLHTDNLSE---------AKSPADM-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i+++++rl++L+ +l+++ ++e+
CP000681_1 281 ----------LNANLAIQKSTKRLSHLVFQLMEIQKLEHL 310

CP000681_3306: domain 1 of 1, from 494 to 562: score 42.9, E = 7.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I +++ L e+l + + e +
CP000681_3 494 ELDRFAYIASHDLKSPLRGIEQLTSWLAEDL-------VDNTNENV- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++ ++r+ L++ lL +sri+
CP000681_3 533 ----------QKYLGLIQNRIHRMVLLLDGLLMFSRIGRV 562

CP000681_0394: domain 1 of 1, from 208 to 272: score 31.9, E = 1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ Ir +e L +++ ++ se
CP000681_0 208 AVRGATDNIAHDLRTPLSHIRIGLEELATKSH------DDISEGC-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e++++l+ + +L l+rie+g
CP000681_0 247 --------------AILIEELDHCLATFDAMLSLTRIEEG 272

CP000681_0659: domain 1 of 1, from 430 to 499: score 31.7, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ a+lsHEL++PL+aI y++ ++ +l ++++ +ee
CP000681_0 430 IAGELGASLSHELNQPLAAIGHYCHGAEVRL-----QRGTSPEEL-- 469

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i++e+ r +++i++l+ l + +
CP000681_0 470 ----------QSVLTLIQQEVTRADSIISRLRNLLKKRPV 499


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 2 0|=
-14 6 0|=
-13 45 2|*===
-12 175 90|======*=======
-11 372 470|============================= *
-10 673 873|==================================================== *
-9 761 902|==========================================================*
-8 667 675|===================================================*
-7 531 425|================================*========
-6 280 244|==================*===
-5 196 134|==========*=====
-4 91 71|=====*=
-3 68 37|==*===
-2 28 19|=*=
-1 20 10|*=
0 11 5|*
1 7 2|*
2 4 1|*
3 0 0|
4 1 0|=
> 5 34 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 272.9716
P(chi-square) = 0

Total sequences searched: 3972

Whole sequence top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: